# Citation

Grandjean, Joanes (2020).
A common mouse fMRI resource through unified preprocessing [Data set].
https://doi.org/10.34973/1he1-5c70.

# Abstract

This is a collection of mouse resting-state fMRI datasets collected by Dr. J. Grandjean in two laboratories (ETH Zurich, Singapore Bioimaging Consortium). The datasets were processed using a common pipeline (see Associated analysis tools). The datasets contain both control animals and experimental animals (transgenic models for Alzheimer's disease, chronic stress model for depression).
data/ contains preprocessed NIFTI into common space
diagnostic/ contains QA summary
motion/ contains motion parameters
template/ contains the AIBS template and mask resampled at 200um 
timeseries/ contains time series extracted using an AIBS-derived atlas
atlas.tsv and .json contain the atlas region-of-interest list and description
participants.tsv and .json contain the study participants list and description

# Background information

You can find more information, including relevant publications pertaining to this dataset on the collection overview page at https://doi.org/10.34973/1he1-5c70.

A complete list of files that are part of this dataset can be found in the file MANIFEST.txt, including a SHA256 hash for each file to allow verification of correct data transfer.

# Restrictions on data access and reuse 

The access to and use of this dataset is only allowed under the conditions listed in the data use agreement, as detailed in the file LICENSE.txt. 

Neither the Donders Institute or Radboud University, nor the researchers that provide this dataset should be included as an author of publications or presentations if this authorship would be based solely on the use of this data. 

However, we ask you to acknowledge the use of the data and data derived from the data when publicly presenting any results or algorithms that benefitted from their use:

    1) Papers, book chapters, books, posters, oral presentations, and all other presentations of results derived from the data should acknowledge the origin of the data as follows: "Data were provided (in part) by the Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen".
    2) Authors of publications or presentations using the data should cite relevant publications describing the methods developed and used by the Donders Institute to acquire and process the data. The specific publications that are appropriate to cite in any given study will depend on what the data were used for and for what purposes. When applicable, a list of publications will be specified on the collection overview page.