% Generated by roxygen2: do not edit by hand % Please edit documentation in R/plot_utils.R \name{plot_tree} \alias{plot_tree} \title{Plot the regression tree.} \usage{ plot_tree(gnet_result, group_idx) } \arguments{ \item{gnet_result}{Results returned by gnet().} \item{group_idx}{Index of the module.} } \value{ None } \description{ Plot the regression tree given the index of a module. } \examples{ set.seed(1) init_group_num = 5 init_method = 'boosting' exp_data <- matrix(rnorm(50*10),50,10) reg_names <- paste0('TF',1:5) rownames(exp_data) <- c(reg_names,paste0('gene',1:(nrow(exp_data)-length(reg_names)))) colnames(exp_data) <- paste0('condition_',1:ncol(exp_data)) se <- SummarizedExperiment::SummarizedExperiment(assays=list(counts=exp_data)) gnet_result <- gnet(se,reg_names,init_method,init_group_num) plot_tree(gnet_result,group_idx=1) }