1. structToolbox
  2. Commit 8cc51a69f6c6e70338061e961437f45bf1a2d027
Browse code

update documentation

Gavin Rhys Lloyd authored on 24/08/2021 08:42:06
Showing 13 changed files
man/HSDEM.Rd
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@@ -38,7 +38,7 @@ M = model_apply(M,D)
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 \references{
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 Lenth R (2021).
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 \emph{emmeans: Estimated Marginal Means, aka Least-Squares Means}.
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-R package version 1.6.2-1, \url{https://CRAN.R-project.org/package=emmeans}.
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+R package version 1.6.3, \url{https://CRAN.R-project.org/package=emmeans}.
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 Pinheiro J, Bates D, DebRoy S, Sarkar D, R Core Team (2021).
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 \emph{nlme: Linear and Nonlinear Mixed Effects Models}.
man/SVM.Rd
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@@ -58,7 +58,7 @@ M = SVM(factor_name='Species',gamma=1)
58 58 
 Meyer D, Dimitriadou E, Hornik K, Weingessel A, Leisch F (2021).
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 \emph{e1071: Misc Functions of the Department of Statistics, Probability
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 Theory Group (Formerly: E1071), TU Wien}.
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-R package version 1.7-7, \url{https://CRAN.R-project.org/package=e1071}.
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+R package version 1.7-8, \url{https://CRAN.R-project.org/package=e1071}.
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 Brereton RG, Lloyd GR (2010).
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 ``Support Vector Machines for classification and regression.''
man/blank_filter.Rd
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@@ -51,5 +51,5 @@ M = model_apply(M,D)
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 Jankevics A, Lloyd GR, Weber RJM (2021).
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 \emph{pmp: Peak Matrix Processing and signal batch correction for
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 metabolomics datasets}.
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-R package version 1.4.0.
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+R package version 1.5.0.
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 }
man/glog_opt_plot.Rd
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@@ -34,5 +34,5 @@ chart_plot(C,M,D)
34 34 
 Jankevics A, Lloyd GR, Weber RJM (2021).
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 \emph{pmp: Peak Matrix Processing and signal batch correction for
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 metabolomics datasets}.
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-R package version 1.4.0.
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+R package version 1.5.0.
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 }
man/glog_transform.Rd
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@@ -37,7 +37,7 @@ M = model_apply(M,D)
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 Jankevics A, Lloyd GR, Weber RJM (2021).
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 \emph{pmp: Peak Matrix Processing and signal batch correction for
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 metabolomics datasets}.
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-R package version 1.4.0.
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+R package version 1.5.0.
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 Durbin B, Hardin J, Hawkins D, Rocke D (2002).
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 ``A variance-stabilizing transformation for gene-expression microarray data.''
man/knn_impute.Rd
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@@ -42,5 +42,5 @@ M = knn_impute()
42 42 
 Jankevics A, Lloyd GR, Weber RJM (2021).
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 \emph{pmp: Peak Matrix Processing and signal batch correction for
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 metabolomics datasets}.
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-R package version 1.4.0.
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+R package version 1.5.0.
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 }
man/mixed_effect.Rd
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@@ -44,7 +44,7 @@ R package version 3.1-152, \url{https://CRAN.R-project.org/package=nlme}.
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 Lenth R (2021).
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 \emph{emmeans: Estimated Marginal Means, aka Least-Squares Means}.
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-R package version 1.6.2-1, \url{https://CRAN.R-project.org/package=emmeans}.
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+R package version 1.6.3, \url{https://CRAN.R-project.org/package=emmeans}.
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 Fox J, Weisberg S (2019).
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 \emph{An R Companion to Applied Regression}, Third edition.
man/mv_feature_filter.Rd
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@@ -45,5 +45,5 @@ M = model_apply(M,D)
45 45 
 Jankevics A, Lloyd GR, Weber RJM (2021).
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 \emph{pmp: Peak Matrix Processing and signal batch correction for
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 metabolomics datasets}.
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-R package version 1.4.0.
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+R package version 1.5.0.
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 }
man/mv_sample_filter.Rd
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@@ -32,5 +32,5 @@ C = mv_sample_filter()
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 Jankevics A, Lloyd GR, Weber RJM (2021).
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 \emph{pmp: Peak Matrix Processing and signal batch correction for
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 metabolomics datasets}.
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-R package version 1.4.0.
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+R package version 1.5.0.
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 }
man/pqn_norm.Rd
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@@ -52,5 +52,5 @@ M = model_apply(M,D)
52 52 
 Jankevics A, Lloyd GR, Weber RJM (2021).
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 \emph{pmp: Peak Matrix Processing and signal batch correction for
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 metabolomics datasets}.
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-R package version 1.4.0.
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+R package version 1.5.0.
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 }
man/rsd_filter.Rd
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@@ -37,5 +37,5 @@ M = rsd_filter(factor_name='Class')
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 Jankevics A, Lloyd GR, Weber RJM (2021).
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 \emph{pmp: Peak Matrix Processing and signal batch correction for
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 metabolomics datasets}.
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-R package version 1.4.0.
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+R package version 1.5.0.
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 }
man/sb_corr.Rd
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@@ -58,7 +58,7 @@ M = sb_corr(order_col='run_order',batch_col='batch_no',qc_col='class')
58 58 
 Jankevics A, Lloyd GR, Weber RJM (2021).
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 \emph{pmp: Peak Matrix Processing and signal batch correction for
60 60 
 metabolomics datasets}.
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-R package version 1.4.0.
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+R package version 1.5.0.
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 Kirwan JA, Broadhurst DI, Davidson RL, Viant MR (2013).
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 ``Characterising and correcting batch variation in an automated direct infusion mass spectrometry (DIMS) metabolomics workflow.''
man/svm_plot_2d.Rd
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@@ -40,5 +40,5 @@ chart_plot(C,M[4],predicted(M[3]))
40 40 
 Meyer D, Dimitriadou E, Hornik K, Weingessel A, Leisch F (2021).
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 \emph{e1071: Misc Functions of the Department of Statistics, Probability
42 42 
 Theory Group (Formerly: E1071), TU Wien}.
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-R package version 1.7-7, \url{https://CRAN.R-project.org/package=e1071}.
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+R package version 1.7-8, \url{https://CRAN.R-project.org/package=e1071}.
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 }