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update documentation, namespace and description

using roxygen

Gavin Rhys Lloyd authored on 06/03/2020 12:03:43
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 % Generated by roxygen2: do not edit by hand
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-% Please edit documentation in R/mean_centre_class.R, R/model_reverse_doc.R
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-\name{model_reverse,mean_centre,DatasetExperiment-method}
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+% Please edit documentation in R/autoscale_class.R, R/mean_centre_class.R,
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+%   R/model_reverse_doc.R
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+\name{model_reverse,autoscale,DatasetExperiment-method}
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+\alias{model_reverse,autoscale,DatasetExperiment-method}
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 \alias{model_reverse,mean_centre,DatasetExperiment-method}
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 \alias{model_reverse}
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 \title{Reverse preprocessing}
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 \usage{
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+\S4method{model_reverse}{autoscale,DatasetExperiment}(M, D)
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+
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 \S4method{model_reverse}{mean_centre,DatasetExperiment}(M, D)
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 }
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 \arguments{
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update to use new struct class constructors

Gavin Rhys Lloyd authored on 06/02/2020 13:51:52
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 \item{M}{a model object}
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 \item{D}{a DatasetExperiment object}
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-
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-\item{...}{additional slots and values passed to struct_class}
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 }
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 \value{
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 Returns a modified DatasetExperiment object
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incremental changes to use struct class constructors

Gavin Rhys Lloyd authored on 04/02/2020 17:18:11
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 \item{D}{a DatasetExperiment object}
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-\item{...}{slots and values for the new object}
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+\item{...}{additional slots and values passed to struct_class}
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 }
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 \value{
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 Returns a modified DatasetExperiment object
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fix broken tests and...

...update some documentation

Gavin Rhys Lloyd authored on 17/12/2019 17:24:38
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 \item{M}{a model object}
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 \item{D}{a DatasetExperiment object}
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+
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+\item{...}{slots and values for the new object}
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 }
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 \value{
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 Returns a modified DatasetExperiment object
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use class contructors and...

...rename all function with dot to underscore
replace dataset with DatasetExperiment

Gavin Rhys Lloyd authored on 17/12/2019 15:48:01
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new file mode 100644
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+% Generated by roxygen2: do not edit by hand
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+% Please edit documentation in R/mean_centre_class.R, R/model_reverse_doc.R
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+\name{model_reverse,mean_centre,DatasetExperiment-method}
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+\alias{model_reverse,mean_centre,DatasetExperiment-method}
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+\alias{model_reverse}
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+\title{Reverse preprocessing}
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+\usage{
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+\S4method{model_reverse}{mean_centre,DatasetExperiment}(M, D)
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+}
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+\arguments{
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+\item{M}{a model object}
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+
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+\item{D}{a DatasetExperiment object}
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+}
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+\value{
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+Returns a modified DatasetExperiment object
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+}
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+\description{
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+Reverse the effect of a preprocessing step on a DatasetExperiment.
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+}
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+\examples{
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+M = example_model()
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+D = model_reverse(M,iris_DatasetExperiment())
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+}