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Commits on Apr 29, 2024

• Create LICENCE.txt

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Commits on Apr 23, 2024

• cistarget_wrangling.py: refactor + docstrings.

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• adata_cistopic_wrangling: refactor + docstrings.

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• scenicplus.py refactoring.

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• Commands.py: Refactor and docstrings.

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• Merge branch 'main' of https://github.com//aertslab/scenicplus

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• Install main branch of pycistarget

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• Update README.md

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• link to main documentation for badge.

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• Link to main documentation.

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• Add mudata to scenicplus object conversion to tutorial.

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• Fix typo in mudata_to_scenicplus function.

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Commits on Apr 4, 2024

• Add function to get old SCENIC+ object

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Commits on Mar 27, 2024

• Add youtube link

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Commits on Mar 22, 2024

• Point cisTopic tutorial to default cisTopic branch RTD.

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• Use default branch of pycisTopic.

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• Fix install tutorial.

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• Fix link to readthedocs.

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• - Update link to development version of read the docs.

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• Update index and install. Use python version 3.11 and conda environment.

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• Fix list in Snakemake tutorial.

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• Version lock all dependencies based on pip-compile. To add new

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Commits on Mar 21, 2024

• Merge branch 'development' of https://github.com//aertslab/scenicplus into development

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• Also add notebooks to notebooks directory.

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• Update tutorial section of documentation.

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• Delete old tutorials.

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• Remove old tutorials.

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• Delete builded docs from repo.

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• Switch project setup to pyrpoject.toml.

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• More versioning

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• set scipy version

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Commits on Mar 14, 2024

• add notebook for running snakemake

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Commits on Mar 12, 2024

• add SCENIC+ logo

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Commits on Mar 11, 2024

• Change figsize calculation.

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• Remove all params from adjust_text

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