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Commits on Jul 17, 2025

• Implement fix of get_sparse_from_igraph() theislab/scvelo#1241

  rwiegan

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Commits on Feb 24, 2025

• Update _logging.py (#1296)

  h4rvey-g

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Commits on Oct 1, 2024

• Update logging (#1281)

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  WeilerP

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  22b6e7e

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• Update docs (#1279)

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  WeilerP

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  77e6b49

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• Update CR2 reference (#1277)

  WeilerP

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• Remove redundant Scanpy functions (#1276)

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  WeilerP

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Commits on Sep 30, 2024

• Remove velovi (#1274)

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  WeilerP

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Commits on Sep 2, 2024

• Remove numpy<2.0.0 pin (#1267)

  WeilerP

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  bef8f1c

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Commits on Jul 11, 2024

• Update densifying sparse array (#1263)

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  WeilerP

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• Fix iteration over Pandas Series (#1262)

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  WeilerP

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Commits on Jun 18, 2024

• Address `numpy>=2.0` issues (#1252)

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  WeilerP

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  d3e81d9

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Commits on Apr 12, 2024

• Fix `get_df` (#1231)

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  Oisin-M

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  WeilerP

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  f21651c

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• Make progress bar optional (#1234)

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  WeilerP

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  31226cd

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• Fix neighbors calculation (#1233)

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  WeilerP

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Commits on Mar 17, 2024

• Update `pyproject.toml` (#1226)

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  WeilerP

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  b2f31b3

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• Update `pyptoject.toml` (#1224)

  WeilerP

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  e81e5f2

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• Remove `debug.py` (#1222)

  WeilerP

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  8aba0c9

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• Update `release.yml` (#1221)

  WeilerP

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• Update `VELOVI::train` (#1219)

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  WeilerP

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• Update `plotting/utils.py::hist` (#1217)

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  WeilerP

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Commits on Feb 22, 2024

• Update `scatter` and `update_axes` (#1205)

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  WeilerP

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  ffe2cd3

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• Unpin scikit-learn (#1194)

  Zethson

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  04f4cc9

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Commits on Feb 14, 2024

• Remove hard `scvi-tools` dependency (#1185)

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  michalk8

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  3f0a612

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Commits on Dec 3, 2023

• Update `pyproject.toml` (#1166)

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  WeilerP

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  809632e

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Commits on Dec 2, 2023

• Update `velocity_graph.py` (#1162)

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  WeilerP

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  d916099

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• Update docs (#1161)

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  WeilerP

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• Fix/unit tests (#1159)

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  WeilerP

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• Update branch names (#1157)

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  WeilerP

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Commits on Dec 1, 2023

• Update `ci.yml` (#1152)

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  WeilerP

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  c845382

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• Add release GitHub action (#1140)

  michalk8

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  9b0f059

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• Add usage of `EMParams` (#1050)

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  johschnee

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  WeilerP

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  43faf36

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• Update `proportions.py` (#1135)

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  Moloch0

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Commits on Jul 25, 2023

• Add metabolic labeling inference (#1103)

  WeilerP

  authored
  d89ca6a

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Commits on Jul 23, 2023

• Update from `python-igraph` to `igraph` (#1101)

  WeilerP

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  88d65d8

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• Update `scv.tl.rank_dynamical_genes` (#1097)

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  milescsmith

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  e0bd3b6

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