Including lncRNAs with low expression levels in the analysis #407
Description
Greetings!
I have a list of differentially expressed lncRNAs (logFC > 1) obtained from DESeq2 that I need to analyze with hdWGCNA, but they don't appear in any co-expression modules. The genes are present in my Seurat object, but seem to be filtered out when using SetupForWGCNA with fraction = 0.05.
Is there a parameter to adjust filtering for low-expression genes in SetDatExpr or elsewhere?
Thank you in advance for your help!