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Commits on May 31, 2017

• Merge pull request #79 from hartzell/patch-1

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  mjafin

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• Cleanup README.md Markdown formatting

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  hartzell

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Commits on May 23, 2017

• Merge pull request #78 from AstraZeneca-NGS/f_integration_test

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  SilinPavel

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Commits on Apr 25, 2017

• integration tests

  ekazachkova

  committed
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Commits on Apr 24, 2017

• version updating

  SilinPavel

  committed
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Commits on Apr 21, 2017

• update submodule version

  SilinPavel

  committed
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Commits on Apr 18, 2017

• Merge pull request #73 from AstraZeneca-NGS/f_fix_StringIndexOutOfBoundsException

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  SilinPavel

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Commits on Mar 31, 2017

• add index validation

  

  Anna_Osipova

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  Anna_Osipova

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Commits on Mar 29, 2017

• update version to 1.5.0

  SilinPavel

  committed
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• Merge branch 'f_amp_multi-allelic'

  SilinPavel

  committed
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• Merge branch 'f_multi_allelic_somdict'

  SilinPavel

  committed
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• Merge pull request #50 from tfenne/tf_leading_insertion_fix

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  SilinPavel

  authored
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• Fixed handling of leading and trailing insertions in cigar strings.

  tfenne

  committed
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Commits on Mar 22, 2017

• cleanup

  

  Anna_Osipova

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  Anna_Osipova

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Commits on Mar 14, 2017

• Merge pull request #69 from cbrueffer/misc

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  SilinPavel

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Commits on Mar 13, 2017

• Fix usage message typos and grammar.

  cbrueffer

  committed
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Commits on Mar 9, 2017

• add circles by all fined variations

  

  Anna_Osipova

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  Anna_Osipova

  committed
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Commits on Mar 1, 2017

• fix for ampVarDict method with multi-allelic site

  ekazachkova

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Commits on Feb 7, 2017

• Updated version: 1.4.10

  

  Zaal Lyanov

  authored and

  Zaal Lyanov

  committed
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Commits on Feb 6, 2017

• Updated version to 1.4.9

  

  Zaal Lyanov

  authored and

  Zaal Lyanov

  committed
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Commits on Feb 5, 2017

• checking of paired read status was added for method isReadsOverlap

  SilinPavel

  committed
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Commits on Feb 2, 2017

• Overlapping reads handling implemented

  

  SilinPavel

  authored and

  Zaal Lyanov

  committed
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Commits on Dec 14, 2016

• Update Readme.md

  

  Zaal Lyanov

  authored
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• style -> java 1.8

  

  SilinPavel

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  Zaal Lyanov

  committed
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Commits on Dec 10, 2016

• change htsjdk version to 2.8

  SilinPavel

  committed
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Commits on Dec 9, 2016

• fix issue for a lot of opened reference files

  SilinPavel

  committed
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Commits on Dec 6, 2016

• Updated to version 1.4.7

  

  Zaal Lyanov

  authored and

  Zaal Lyanov

  committed
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Commits on Dec 5, 2016

• fix for issue 56: VarDict Amplicon Mode throws IndexOutOfBoundsException

  

  Zaal Lyanov

  authored and

  Zaal Lyanov

  committed
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• Reduced SAMReader instantiations by confining them into thread local. Now one SAMReader can maintain multiple region queries (sequentially).

  

  Zaal Lyanov

  authored and

  Zaal Lyanov

  committed
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Commits on Oct 25, 2016

• Updated readme

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  mjafin

  authored
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Commits on Sep 24, 2016

• Bug fixes

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  zhongwulai

  committed
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Commits on May 20, 2016

• updated verson to 1.4.6

  

  Zaal Lyanov

  authored and

  Zaal Lyanov

  committed
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Commits on May 17, 2016

• Merge pull request #40 from tfenne/tf_fix_indexoutofbounds

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  mjafin

  committed
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Commits on May 11, 2016

• When altering soft-clipping at the end of the read, don't attempt to trim back the read after any soft-clipping was removed.

  tfenne

  committed
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Commits on May 2, 2016

• Update Readme.md

  zhongwulai

  committed
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