Search Results for "image acquisition toolbox matlab"
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Showing 38 open source projects for "image acquisition toolbox matlab"
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gptoolbox
Matlab toolbox for Geometry Processing
gptoolbox is a comprehensive MATLAB toolbox for geometry processing, optimization, and image processing. It provides a wide range of utility functions for working with triangle and tetrahedral meshes, making it useful for tasks in computer graphics, computational geometry, and 3D modeling. The toolbox includes wrappers for external software such as TetGen, Triangle, QSlim, and meshfix, as well as functions for mesh smoothing, cleanup, deformation, and parameterization. ... -
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export_fig
A MATLAB toolbox for exporting publication quality figures
export_fig is a MATLAB toolbox designed to simplify high-quality figure export from MATLAB, faithfully preserving visual appearance as seen on-screen—including size, colours, fonts, and layout—while offering precise control over output formats such as PNG, PDF, EPS, and more. Exporting a figure from MATLAB the way you want it (hopefully the way it looks on screen), can be a real headache for the unitiated, thanks to all the settings that are required, and also due to some eccentricities... -
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MIRT.jl
MIRT: Michigan Image Reconstruction Toolbox (Julia version)
MIRT.jl is a collection of Julia functions for performing image reconstruction and solving related inverse problems. It is very much still under construction, although there are already enough tools to solve useful problems like compressed sensing MRI reconstruction. Trying the demos is a good way to get started. The documentation is even more still under construction. -
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TIGRE
TIGRE: Tomographic Iterative GPU-based Reconstruction Toolbox
TIGRE is an open-source toolbox for fast and accurate 3D tomographic reconstruction for any geometry. Its focus is on iterative algorithms for improved image quality that have all been optimized to run on GPUs (including multi-GPUs) for improved speed. It combines the higher-level abstraction of MATLAB or Python with the performance of CUDA at a lower level in order to make it both fast and easy to use. -
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Artifact GeoMorph Toolbox 3D 3.1
A toolbox for 3DGM shape analysis of archaeological artifacts
The Artifact Geomorph Toolbox 3D software is designed to provide the archaeologist interested in artifact shape variability with a toolbox to allow the acquisition, analysis and results exploration of homologous 3D landmark-based geometric morphometric data. As such, the toolbox contains an automated item and semi-landmarks positioning procedure and the fundamental statistical analyses and procedures to allow the processing and analysis of the data. It is designed to be easy to use and... -
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iElectrodes
intracranial electrodes localization toolbox
iElectrodes is a free and open-source Matlab® toolbox to obtain intracranial electrode coordinates from MRI and CT images. Precise and reliable localization can be achieved fast and in a semiautomatic way with minimal user intervention. The toolbox works with ECoG (subdural grids and strips) and SEEG (depth) electrodes. The new GridFit algorithm can precisely localize high-density electrodes (up to 3mm). -
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ReViMS
ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy
...It provides a number of tools for: (a) segmenting z-stacks of fluorescence images; (b) reconstructing the 3D surface of the aggregates and estimating several features (including the volume). ReViMS is written in MATLAB (The MathWorks, Inc., Massachusetts, USA). It is an open-source tool and the source code is freely available at: http://sourceforge.net/p/revims Requirements: MATLAB R2017b and Image Processing Toolbox 10.1 or later versions. -
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ReViSP
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
Reconstruction and Visualization from a Single Projection (ReViSP) tool: a 3D volume rendering method we developed to reconstruct the 3D shape of multicellular spheroids, besides estimating the volume by counting the voxels (3D pixels) fully included in the 3D surface. ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements for running ReViSP from the source code: MATLAB 2020a and Image Processing Toolbox 11.1 or later versions. Please, when using this software, cite these articles: (a) F. Piccinini, et al., Cancer multicellular spheroids: Volume assessment from a single 2D projection. ... -
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MarsBaR is a Matlab toolbox for analyzing image data within Regions of Interest (ROIs). Its current home is on Github: see http://marsbar-toolbox.github.io/marsbar
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ANDTool
Analysis Nuclei DAB (AND) Tool
...USER MANUAL: see the specific PDF available in the Files section. REQUIREMENTS: MATLAB R2017b and Image Processing Toolbox 10.1 or later versions. MAIN CONTACT: Filippo Piccinini (E-mail: filippo.piccinini85@gmail.com) -
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PRMLT
Matlab code of machine learning algorithms in book PRML
...It also requires Statistics Toolbox (for some simple random number generator) and Image Processing Toolbox (for reading image data). The code is extremely compact. Minimizing code length is a major goal. As a result, the core of the algorithms can be easily spotted. Many tricks for speeding up Matlab code are applied (e.g. vectorization, matrix factorization, etc.). -
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TracTrac
Massive Object Tracking Software (Matlab/Python)
TracTrac is a Particle Tracking Velocimetry (PTV) software which is extremely fast (more than 10k points tracked per second, 100k under python) and accurate (up to 0.01 pixel resolution), forming thus a good concurrent to the state-of-the art PIV/PTV algorithms. It allows to track anything that moves: birds, ants, grains, water flows... It runs on Python (v2&3) or Matlab (>2012a with Image Processing toolbox). Give it a try ! Get the last sources on GitHub: https://github.com/jorishey1234/tractrac -
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ConvNet Burden
Memory consumption and FLOP count estimates for convnets
convnet-burden is a MATLAB toolbox / script collection estimating computational cost (FLOPs) and memory consumption of various convolutional neural network architectures. It lets users compute approximate burdens (in FLOPs, memory) for standard image classification CNN models (e.g. ResNet, VGG) based on network definitions. The tool helps researchers compare the computational efficiency of architectures or quantify resource needs. -
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Toolbox
Piotr's Image & Video Matlab Toolbox
Piotr’s Image & Video MATLAB Toolbox is a general-purpose MATLAB toolbox for image and video processing and vision tasks, offering utilities, filters, detection, feature extraction, and algorithm building blocks. Example and demo scripts for usage (e.g. acfReadme, detector readmes). It augments MATLAB’s native capabilities (not replacing the Image Processing Toolbox) by providing efficient, reusable wrappers and optimized routines. ... -
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Qu is a MATLAB toolbox for the visualization and analysis of N-dimensional datasets targeted to the field of biomedical imaging. It supports several microscopy image formats and offers a plugin mechanism and a consistent API for easy extension.
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Scilab Image Processing Toolbox
Advanced image processing toolbox for Scilab on Unix/Linux/Mac OS
SIP is the image processing and computer vision package for SciLab, a free Matlab-like programming environment. SIP reads/writes images in formats like JPEG, PNG, and BMP. It does filtering, segmentation, edge detection, morphology, and shape analysis. Download from Git http://siptoolbox.sourceforge.net/devel -
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MRiLab
A Numerical MRI Simulation Platform
The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time... -
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F-Tracker3D
A software tool for tracking fluorescent cells in 3D
...Then, the 3D track of each cell is obtained analysing the z-stacks and looking for the z-plane with the maximum intensity value for the different x-y positions previously determined. F-Tracker3D is written in MATLAB (©, The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements: MATLAB 2015a and Image Processing Toolbox 9.2 or later versions. -
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TraceX
MatLab App for calculating fitting isotopic exchange profile data
MatLab App for calculating fitting isotopic exchange profile data. Developed for measuring self-diffusivity and effective surface exchange coefficient of ion conducting materials. Requires MatLab image processing toolbox If you use this tool for you research, please cite my PhD thesis: Cooper, S. J. Quantifying the Transport Properties of Solid Oxide Fuel Cell Electrodes. -
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SPIW - Scanning Probe Image Wizard
Scanning Probe Image Wizard - MATLAB Toolbox
SPIW is a MATLAB toolbox, for automated processing of scanning probe microscope images. Tools are applicable to all SPM images, but the main focus is on images with atomic or molecular resolution. SPIW is primarily a MATLAB toolbox with functions designed to be called in a user's own script. SPIW also has a very basic GUI for browsing and exporting images. For information on SPIW's performance see our publication ( http://dx.doi.org/10.1063/1.4827076 ) in the Review of Scientific... -
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flow visualization toolbox
matlab 2D image processing GUI toolbox for flow visualization
A general flow visualization Matlab toolbox for image processing of some common planar/surface visualization techniques from PLIF (Planar laser induce fluorescence) for tracer distribution, BOS (background oriented Schlieren) for density, TSLC (Temperature sensitive liquid crystal) for thermal and PSP (Pressure sensitive paint) pressure distribution measurement. -
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REST4roots
Evaluation software for shovelomics images
Root Estimator for Shovelomics Traits (REST) is a software developed for an automated or semi automated high-throughput analysis of root system traits form high quality RGB pictures. Standardized image acquisition is strongly recommended and briefly described in the manual which you can get here for free http://plantscience.psu.edu/research/labs/roots/publications/overviews/next-generation-shovelomics-set-up-a-tent-and-rest -
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GridMos
GridMos, mosaicing tool (in MATLAB) to improve cell counting.
...The Graphical User Interface (GUI) implemented makes GridMos a very user-friendly software tool. Requirements: MATLAB 2009b (32-bit) and Image Processing Toolbox 8.1 or later versions. -
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matImage
An image processing and analysis library for Matlab
MatImage is a Matlab library for image processing and analysis in 2D and 3D. It contains more than 250 fonctions for image enhancement, filtering, analysis, or visualisation, as well as for creating basic test shapes. It is built as a complement of the Mathworks image processing toolbox (IPT). Project is being transfered to GitHub: http://github.com/dlegland/matImage -
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This computer-aided diagnosis (CAD) software (MATLAB toolbox) has been developed for automated prediction of tuberculosis (TB) from chest X-ray (CXRs) of patients. This toolbox was developed by incorporating more diversified global features extraction methods such as Gist and PHOG. It is effective in discriminating between CXR(s) of non-TB and TB patients. It contains two modules: Training and Prediction Modules.
