Open Source Groovy Scientific/Engineering Software for ChromeOS

OpenMRS is a community-developed, open source, enterprise electronic medical record system. Our mission is to improve health care delivery in resource-constrained environments by coordinating a global community to creates and support this software.

JLink lets users author flow charts based on ISO 5807 and IBM standards. Developers can use JLink to add flowcharts to applications, serve a flow chart over the web in PDF or PNG, or dynamically create a flowchart with Javascript, Python or Ruby scripts

Combean is a Java framework for mathematical structures and optimization algorithms. Through a set of Java interfaces and JavaBeans-based config, Combean glues optimization codes together - leading to more interoperable, adaptable and flexible solutions.

IRSA is a toolkit for Information Retrieval Service Assessment. It builds upon the Grails Web Framework and is developed at GESIS. It implements two main functionalities: (1) A number of showcases that show the implemented services like a so-called Search Term Recommender and different science-model based ranking mechanisms and (2) an IR assessment module that let's one do an interactive evaluation of the retrieval services. All implemented services are available via well-documented RESTful API. This toolkit is distributed under an Apache License 2.0.

VarPlan is a web application to visualize and manage variants as tree like graph view. The approach is to keep the overview on hundreds of variants with their meta informations.

A command line tool for text file analyis, filtering, splitting and reporting. Runs under Java (1.5+), supports plugins written in Groovy. Has nix and win batch files in distributions.

The Swiss Protein Identification Toolbox (swissPIT) is a project at the Swiss Institute for Bioinformatics (SIB) in Geneva which aims at the development of an automated analysis system to identify proteins using MS and MS/MS based data.