Open Source Java Scientific/Engineering Software for Linux

OpenMRS is a community-developed, open source, enterprise electronic medical record system. Our mission is to improve health care delivery in resource-constrained environments by coordinating a global community to creates and support this software.

FCSalyzer is a free program for analysing flow cytometry data. It is programmed in Java and should therefore work on many different operating systems. FCSalyzer offers an easy What-you-see-is-what-you get interface and provides the standard analysing tools - dot plots, histograms, complex gating strategies and associated statistics. Impressum / Legal Notice Sven Mostböck Wien Austria e-mail: sven_mostboeck@users.sourceforge.net second contact option: use the open discussion on the FCSalyzer sourceforge page: http://sourceforge.net/p/fcsalyzer/discussion/

BoofCV is an open source Java library for real-time computer vision and robotics applications. Written from scratch for ease of use and high performance, it provides both basic and advanced features needed for creating a computer vision system. Functionality include optimized low level image processing routines (e.g. convolution, interpolation, gradient) to high level functionality such as image stabilization. Released under an Apache 2.0 license for both academic and commercial use.

A cross platform disk benchmark utility written in Java. Measure a drive's read and write speed by creating and accessing data files at your chosen location. Results shown in an easy-to-understand graph, allowing clear characterization of storage device behavior. Tune a benchmark's number of threads, block sequence/size, sample size. Benchmarks are saved for historical analysis. Please try our latest windows installer: https://sourceforge.net/projects/jdiskmark/files/jdiskmark-0.6.1.msi Verify 0.6.1 download w SHA-256 Hash: B120C499ED49D934D0E48D265CB7D6B789940CA00ACF71435F8BA68D68802F9E Instructions to verify file SHA-256 signature: https://sourceforge.net/p/jdiskmark/wiki/%20Verifying%20SHA-256%20Hash%20on%20Windows%20with%20PowerShell/ ZIP releases require java to be installed separately: * v0.5.0-v0.6.0 >Java 21 * v0.1-v0.4 > Java 8 user manual: https://github.com/jDiskMark/jdm-java/wiki/0.6.0-User-Manual

DataCleaner is a data quality analysis application and a solution platform for DQ solutions. It's core is a strong data profiling engine, which is extensible and thereby adds data cleansing, transformations, enrichment, deduplication, matching and merging. Website: http://datacleaner.github.io

Wrapper for vendors to simplify usage of the Java Speech API (JSR 113). Note that the spec is an untested early access and that there may be changes in the API.

CompPad is a LibreOffice extension that provides live mathematical and engineering calculations within a Writer document. It is intended to provide a free / open-source alternative to Mathcad .

This is a Java port of my C++ conversion utility from Geodesica-SFX. Currently only the Length tab is implemented. User can enter fractional or decimal values and set the number of divisions for the following input units: Fermi, Ångströms, Microns, Micro-Inches, Mils, Lines, Inches, Meters, Kilometers, Astronomical Units, Light Years, Parsecs, Palms, Hands, Feet, Yards, Fathoms, Cables, Furlongs, Rods, Chains, Links, Miles, US Nautical Miles, UK Nautical Miles, Admiralty Miles, Leagues, Digits, Royal Cubits, Palestinian Cubits, Sacred Cubits, Greek Cubits, Sumerian Feet, Roman Feet, Roman Paces, Roman Furlongs, Remen, Stadia, Megalithic Yards, Megalithic Fathoms and Megalithic Miles. User has full control of BigDecimal computations and can set both the working and output precision, as well as the rounding mode for any given application.

niftilib is a collection of i/o routines for the nifti1 neuroimage data format. C (nifticlib), Java (niftijlib), Matlab (niftimatlib), and Python (pynifti) code is available. For nifti format info see: http://nifti.nimh.nih.gov/

This ohnlp project has released "pipelines" that were contributed by members of the OHNLP Consortium. The pipelines are based on the Apache UIMA framework. medKAT/P, MedCoref, MedTagger, MedXN, and cTAKES are licensed under Apache License V2.0. MedTime is licensed under GNU General Public License version 3.0 (GPLv3). cTAKES development has moved to apache.org. See http://ctakes.apache.org/

The goal of this project is to be an improvement of the original Network Animator (NAM) module provided as part of the Network Simulator 2 (NS2). This tool provides topology visualization, TCL script generation, and enhanced simulation animation.

OO Pinyin Guide is a Java extension for OpenOffice 3 or higher. It enables the user to add pinyin transliteration over Chinese characters inside a text document. This tool can be useful for people learning or teaching Chinese.

An open tool, tied to www.hobbybirra.com, to formulate, manage, preview homebrewing recipes, upload them to a common repository, and share them with other homebrewers. Latest official releases on http://www.hobbybirra.it/hobbybrew/

User friendly PDB (Protein Data Bank) file editor with graphic user interface for protein crystallographers to expedite selective parallel edit / data extraction / analysis of their PDB files

CorpusSearch finds syntactic structures in a corpus of annotated sentence trees. It can be used as a research tool on a corpus, or as a development tool for building the corpus.

RAPSim (Renewable Alternative Powersystems Simulation) is a free and open source micro-grid simulation framework for better understanding of power flowing behavior in smart microgrids with renewable sources. It is able to simulate grid-connected or standalone microgrids with solar, wind or other renewable energy sources. The proposed software calculates the power generated by each source in the microgrid and then it conducts a power flow analysis. This software is helpful for optimal placement of distributed generation units in a micro grid. RAPSim is designed for use in science and classroom with a simple to use graphical interface. It is an easily extendable framework that supports users in implementation of their own models, for grid objects, and algorithms for grid control.

This project provides a analog / mixed signal IC schematic capture and layout tool with the accompanying netlisters, simulators, and verification tools.

A java library for geometry applications. Provides a general framework for manipulating and creating geometric primitives, computing intersection points between shapes, composing them to create new shapes, and performing some measurements. Important note: the repository has now moved to GitHub: https://github.com/dlegland/javaGeom Please update bookmarks!

ASDN - "Agile Supply Demand Networks" is software for analyzing and developing logistics networks.

Java-based extensible high-precision math package. Includes support for computations based on fractions. Support is included for converting to floating point numbers and BigDecimals.

OpenAstrology is Java based Object-orientated implementation of Astrology. OpenAstrology will provide a platfrom to plug-in in the knowledge of Astrology and the derived solution will be the best real time Astrology solution

Plataforma de creación de información georeferenciada desde dispositivo móvil. Aplicación de escritorio 3D para explotación de la información. NEW: actualizada apk para soporte hasta Android 4.4 KitKat

JLink lets users author flow charts based on ISO 5807 and IBM standards. Developers can use JLink to add flowcharts to applications, serve a flow chart over the web in PDF or PNG, or dynamically create a flowchart with Javascript, Python or Ruby scripts

This project provides and open source implementation of HELD and related specifications. A HELD client and Location Information Server are included.

Object oriented reusable software classes designed to be used to construct larger software projects developed in multiple software languages.