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Store and verify MD5 checksums within file's extended attributes. Operational on individual files as well as entire directory trees of files. Using this routinely will detect if bit-rot or other unwanted modification of low level file content has occurred.
sechk - SEcurity CHecKer
It is a powerful and useful tool to check if you got exploited and rooted, it will use checksum comparation via md5 sum, it exchanges file lists and csums from the sechk server. It\'s gonna work with all posixes and unixes.