Download
ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0.
Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11.
Features
- Extracts time series from individual grids (cells) and plots in various formats
- Detects peak positions and plot them as raster plots and histograms
- Displays spatial distribution of oscillatory parameters, e.g. period
- Estimates period using three independent measures (FFT/peak-peak/unwrapping)
- Extracts time-dependent phases by using dimensional embedding
- Detrends and normalizes raw time series
- Reconstruct time-lapse images using normalized oscillations
- Find clusters using spectral clustering and partial correlations
- Calculates time-dependent phase coherence by Kuramoto Synchronization Index
- Performs phase unwrapping
- Animates phase development in a clock-like format
Project Samples
License
Academic Free License (AFL)Follow ImagingAnalysis
Other Useful Business Software
AI-powered service management for IT and enterprise teams
Give your IT, operations, and business teams the ability to deliver exceptional services—without the complexity. Maximize operational efficiency with refreshingly simple, AI-powered Freshservice.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of ImagingAnalysis!