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Comment: weird model design for DE analysis by Gordon Smyth 52k
Nowadays you can use voomLmFit(), which will automate the use of voom() and duplicateCorrelation().
Comment: Transcript expression analysis using EdgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth thank you very much for the detailed response.
Comment: DEP R-package run_app ("TMT") spits this error: "Error: 'imputeMethods' is not a by shepherl 4.2k
I just reached out to the maintainer as well to see if they are still maintaining the package and to fix the reported bug.
Comment: Inclusion of non-coding portions of transcripts (UTR-regions and introns) within by Tim • 0
Whether you're starting university or returning after a break, the pressure can sneak up fast - especially when assignments start piling up…
Answer: DEP R-package run_app ("TMT") spits this error: "Error: 'imputeMethods' is not a by James W. MacDonald 68k
This is a bug that was [reported on the issues page for DEP][1] way back in 2021, and is apparently yet to be fixed. I would normally sugge…
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A: weird model design for DE analysis
Transcript expression analysis using EdgeR
Answer: Transcript expression analysis using EdgeR
Answer: Transcript expression analysis using EdgeR
Answer: competitive enrichment test yields too few significant results, self-contained t
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