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News: Bioconductor Board Nominations Open
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Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO Bioconductor DESeq2 Arabidopsis_thaliana_Data
updated 7 days ago by 68k • written 7 days ago by • 0
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News: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
13 days ago Wei Shi ★ 3.6k
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Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-derived metabolic measures and various traits
limma Bioconductor Metabolomics
updated 17 days ago by 52k • written 21 days ago by • 0
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Starting with a clean bioconductor rstudio container
Bioconductor
updated 29 days ago by ★ 4.9k • written 4 weeks ago by • 0
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Bioconductor version cannot be validated
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Job: Lab Head positions at the WEHI, Melbourne, Australia
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6 weeks ago Gordon Smyth 52k
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Bioconductor version cannot be validated
Bioconductor Annotation Ann
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GBCC2025: New Scholarship Opportunities Available!
Community Conference GBCC2025 Bioconductor
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Best tximport quant.genes.sf
tximport tximeta Bioconductor
updated 10 weeks ago by ★ 4.9k • written 10 weeks ago by • 0
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Version conflict when pushing to scQTLtools devel branch
Bioconductor
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Package developing and interoperation with Bioconductor
Package Bioconductor
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News: EuroBioC2024 abstract submission is open!
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News: List of Deprecated Packages for Bioc3.20
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9 months ago • updated 3 months ago shepherl 4.2k
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News: EuroBioC2025: Abstract Submissions Open!
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5 months ago Maria Doyle ▴ 100
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News: EuroBioC2023 abstract submission is open!
presentation EuroBioC2023 Conference community Bioconductor
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batch effect removal for agilent microarray data
" "Bioconductor" Bioconductor
5 months ago gaye.yilmaz • 0
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Job: Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
5 months ago Wolfgang Huber ★ 13k
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For some reason I can't update BiocManager to 3.20
Bioconductor
updated 5 months ago by 4.2k • written 5 months ago by • 0
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News: GBCC2025 Abstract Submissions & Registration Now Open!
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News: Announcing the GBCC2025 Logo Design Winner!
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5 months ago Maria Doyle ▴ 100
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5 months ago Maria Doyle ▴ 100
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News: EuroBioC2023 abstract submission closing soon!
presentation EuroBioc2023 Conference community Bioconductor
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Build error on kunpeng2 Linux aarch64
Bioconductor
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bioconductor packages on bioconda
Bioconductor
updated 7 months ago by 68k • written 7 months ago by • 0
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Allele frequencies for ALL alleles of one SNP ?
Bioconductor
8 months ago Abiologist • 0
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Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 8 months ago by 4.2k • written 2.5 years ago by ▴ 50
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News: Bioconductor 3.20 is Released!
Bioconductor Release Software
8 months ago shepherl 4.2k
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News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
9 months ago Maria Doyle ▴ 100
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1.1k
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Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 9 months ago by 68k • written 9 months ago by • 0
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DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2 Bioconductor
updated 9 months ago by 43k • written 10 months ago by ▴ 10
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
10 months ago Maria Doyle ▴ 100
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Can't post a question?
Bioconductor
updated 4 months ago by • 0 • written 10 months ago by • 0
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How to read OSCA book?
BIOCON OSCA Bioconductor
10 months ago zr • 0
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WARNING: No Bioconductor dependencies detected.
Bioconductor Biocon
10 months ago katja.danielzik • 0
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concentration tables suitable as input for new packages?
Bioconductor
written 10 months ago by • 0
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
10 months ago Maria Doyle ▴ 100
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ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor clusterProfiler
updated 10 months ago by ▴ 760 • written 10 months ago by • 0
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News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
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1.9k
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Unable to install/use limma
limma Bioconductor
updated 10 months ago by 68k • written 10 months ago by • 0
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Review process for delivering R packages
Bioconductor
10 months ago XFWu • 0
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News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
10 months ago Maria Doyle ▴ 100
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Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 11 months ago by • 0
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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS AI Bioconductor
updated 11 months ago by ▴ 10 • written 11 months ago by ▴ 180
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BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024 Community Conference Bioconductor
11 months ago Maria Doyle ▴ 100
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News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
11 months ago Maria Doyle ▴ 100
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Bioconductor Submission question
Bioconductor
11 months ago XFWu • 0
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News: Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB CAB Bioconductor
11 months ago shepherl 4.2k
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
11 months ago Maria Doyle ▴ 100
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1.1k
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featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
12 months ago • updated 11 months ago Jessica • 0
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Answer: Comparing gene expression between species and strains by James W. MacDonald 68k
Analysis advice is off-topic for this site. You might ask over on biostars.org instead.
Comment: Using shrunken LFC and s-value from DESeq2 as DGE results by Erika • 0
Hi @mikelove, Can you help me with this, please? Thanks
Answer: MEDIPS.meth gives table with NA rpkm values by James W. MacDonald 68k
In the vignette, in section 4.2 under the `diffnorm` section it says you only get RPKM if you use diff.method = "ttest", and you chose the …
Comment: Bioinformatician in Core Facility (100%) by Piona • 0
https://goldblum.ch/knowledgebase/buy-a-swiss-shelf-company For anyone considering doing business in Switzerland, I came across a helpful r…
Comment: SeSAMe DMR for EPIC V2 by MargaretJDinan • 0
Note when playing [8 Ball Billiards][1], you need to aim at the target which is your group of balls to shoot. [1]: https://8ballbilliar…
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A: dream vignette says limma-voom repeated measures two-group comparison needs two
A: time series, block by patient, between and within comparisons limma-voom
Answer: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
Answer: Non-monotonic voomByGroup plot in Xenium data
Comment: competitive enrichment test yields too few significant results, self-contained t
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