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scuttle

updated 9 months ago by Aaron Lun ★ 29k • written 9 months ago by Adam ▴ 10

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scran bluster scater scuttle

updated 17 months ago by ATpoint ★ 4.9k • written 17 months ago by Dario Strbenac ★ 1.6k

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updated 2.0 years ago by ATpoint ★ 4.9k • written 2.0 years ago by Abbi Edwards • 0

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scuttle scater seurat SpatialExperiment

2.6 years ago cathalgking ▴ 10

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scuttle scater SpatialExperiment

updated 2.6 years ago by alan.ocallaghan ▴ 160 • written 2.6 years ago by cathalgking ▴ 10

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normalizeCounts scran librarySizeFactors scuttle scRNAseq

3.5 years ago behr201 • 0

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3.9 years ago • updated 3.8 years ago enricoferrero ▴ 680

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scran SingleCellExperiment scuttle scater

updated 4.7 years ago by Aaron Lun ★ 29k • written 4.7 years ago by enricoferrero ▴ 680

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scran scater scuttle

updated 5.1 years ago by Aaron Lun ★ 29k • written 5.1 years ago by enricoferrero ▴ 680

9 results • Page 1 of 1

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Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0

Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks

Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0

I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…

Comment: ROAST compare results with complex design by Gordon Smyth 52k

It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.

Answer: ROAST compare results with complex design by James W. MacDonald 68k

You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…

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Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

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