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User Manual

This document provides a step-by-step guide for using MobaXterm software to connect to a Master node and submit jobs. It includes commands for job submission, status checking, job deletion, and managing job holds. Additionally, it offers examples of scripts for submitting both serial and parallel jobs in a Grid Environment.

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27 views3 pages

User Manual

This document provides a step-by-step guide for using MobaXterm software to connect to a Master node and submit jobs. It includes commands for job submission, status checking, job deletion, and managing job holds. Additionally, it offers examples of scripts for submitting both serial and parallel jobs in a Grid Environment.

Uploaded by

gfgc4383
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as DOCX, PDF, TXT or read online on Scribd

Step 1. Download MobaXterm_Personal_21.2 software in PC.

Step 2. Open Mobaxterm


Step 3. Click on new session

Step 4. Enter the IP of the Master node and user name.

Put ip here(172.16.220.100)
Put your user name

Check it

Step 5. Click ok.


Step 6. Enter your password and press Enter.(default password is : password)
comman
description Usage Effect
d

qsub Submit a job qsub myjob Submits the job "myjob" for the
execution.

qstat Show status of batch jobs qstat -u bellj Show the status of all the jobs
qstat -a submitted by the user bellj
(Jason Bell).
Display all jobs in alternative
format

qdel Delete a job qdel 3221.pbsserver Deletes the job with job id
3221.

qhold Place a hold on a job to keep it qhold 54.pbsserver Puts the user hold on job 54.
from being scheduled for
running

qrls Remove a hold from a job qrls -h u 54.pbsserver Releases the user type hold
from the job 54.

Submitting a serial Job:

[hpcmpcl@RACHEL~]# vim submit.sh


#!/bin/bash
#These commands set up the Grid Environment for your job:
#PBS -N ExampleJob
#PBS -l select=1,
#PBS -q select queue (i.e. run, short,long)
#print the time and date
date
#wait 10 seconds
sleep 10
#print the time and date again
Date

Submitting Parallel Job

#!/bin/bash
#PBS -N "Job Name"
#PBS -q workq
#PBS -o $PBS_JOBID.out
#PBS -e $PBS_JOBID.err
#PBS -l select=2:ncpus=32
#PBS -S /bin/bash -V
#print the time and date
date
#wait 10 seconds
sleep 10
#print the time and date again
Date

Name of CPU job submission script is : cpujobsubmit.sh


Name of GPU job submission script is : gpujobsubmit.sh

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