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Biostrings - Section 2 - Bioconductor Basics With GRanges and Biostrings - Introduction To Bioconductor - Edx v7

The document discusses the Biostrings package in Bioconductor, which allows for efficient handling of DNA, RNA, and amino acid sequences. It introduces DNAString objects and their functionalities for molecular sequence data analysis. The tutorial aims to guide users through the basics of using DNAStrings and related XString objects in R.

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3 views2 pages

Biostrings - Section 2 - Bioconductor Basics With GRanges and Biostrings - Introduction To Bioconductor - Edx v7

The document discusses the Biostrings package in Bioconductor, which allows for efficient handling of DNA, RNA, and amino acid sequences. It introduces DNAString objects and their functionalities for molecular sequence data analysis. The tutorial aims to guide users through the basics of using DNAStrings and related XString objects in R.

Uploaded by

avocegbserge1
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PDF, TXT or read online on Scribd
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HarvardX PH525.

5x
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Introduction to Bioconductor

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Course Section 2: Bioconductor basics with GRanges and … Biostri…


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DNAString objects Pursue a verified


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DNAString Objects
Simple and efficient handling of DNA, RNA and amino
acid sequences in Bioconductor is enabled by the
Biostrings package. The package defines several This is to certify that

classes for representing individual molecular serge avoce Maurilio

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successfully completed and received Pugliesi

sequences as well as sets of sequences. The a passing grade in Professor

PH525.5x:Introduction UniversityX

package also provides highly optimized functions for to Bioconductor

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a course of study offered by Justine Doe,
performing common operations on sequences and Ph.D.

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HarvardX, an online learning initiative
of Harvard University. Professor

sequence sets.

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In this section, we will use DNA sequences to P


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illustrate the basic tools for working with molecular


sequence data with Bioconductor. In the Biostrings
Unlimited access to all course materials
package, DNA sequences are represented as
DNAString objects. There are also RNAString and AI learning assistant and translations
AAString classes with similar properties for Shareable verified certificate
representing RNA and protein sequences.
Collectively, these objects are referred to as XString
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objects. The functions demonstrated here using
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DNAStrings can be applied to any of the XString
objects in R.

This tutorial will walk you through the basics of using


Sometimes
DNAStrings you may need to
convert .DNAStrings back into
character strings for manipulation
in R.an
Launch You can dosession
RStudio this withand click the button below
as.character .
to get started! You can also follow along in the R
markdownDonescript ← . Back Next →
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Show me how to use the code.

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