We formulate the problem of shape‐from‐operator (SfO), recovering an embedding of a mesh from intrinsic operators defined through the discrete metric (edge lengths). Particularly interesting instances of our SfO problem include: shape‐from‐Laplacian, allowing to transfer style between shapes; shape‐from‐difference operator, used to synthesize shape analogies; and shape‐from‐eigenvectors, allowing to generate ‘intrinsic averages’ of shape collections. Numerically, we approach the SfO problem by splitting it into two optimization sub‐problems: metric‐from‐operator (reconstruction of the discrete metric from the intrinsic operator) and embedding‐from‐metric (finding a shape embedding that would realize a given metric, a setting of the multidimensional scaling problem). We study numerical properties of our problem, exemplify it on several applications, and discuss its imitations.