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Answer: Difference between logFC in limma-voom and weighted limma-voom
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No, your formula is not correct, for several reasons. voom is always a weighted method, whether it includes sample weights or not. The samp…
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It's all heuristic anyway, so it's not surprising to give or take a few thousand cells. I suspect you'd get that much variation if you fidd…
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Thank you so much! I would compare every two groups separately.
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Ah, I'd forgotten about how the knee comes into the calculation.
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