Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
hdf5array
•
reset
0
votes
3
replies
614
views
Is it possible to parallelise saveHDF5SummarizedExperiment
HDF5Array
7 months ago
Stefano Mangiola
▴ 40
3
votes
3
replies
1.3k
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
14 months ago
jacques.imbert
• 0
4
votes
6
replies
1.6k
views
Problem loading HDF5Array in R 4.3.2
HDF5Array
updated 15 months ago by
Akshay
• 0 • written 19 months ago by
Sarah
▴ 10
0
votes
2
replies
1.1k
views
Error in H5Fopen
HDF5Array
updated 23 months ago by
James W. MacDonald
68k • written 23 months ago by
gabriele.favaretto
• 0
4
votes
3
replies
2.6k
views
Efficiently working with HDF5-backed SingleCellExperiments
HDF5Array
SingleCellExperiment
DelayedArray
2.8 years ago • updated 2.7 years ago
merv
▴ 150
1
vote
1
reply
2.2k
views
Extract only dataframes from AnnData objects
rhdf5
HDF5Array
anndata
SingleCellExperiment
updated 2.8 years ago by
Peter Hickey
▴ 760 • written 2.8 years ago by
merv
▴ 150
5
votes
1
reply
3.8k
views
How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable format?
HDF5Array
SingleCellExperiment
DelayedArray
2.8 years ago
merv
▴ 150
0
votes
0
replies
1.6k
views
Combining multiple MTX (matrix market) files to HDF5 Array format
HDF5Array
SingleCellExperiment
DelayedArray
2.8 years ago
merv
▴ 150
4
votes
3
replies
1.5k
views
Problem opening hdf5 files previously created with HDF5Array functions
HDF5Array
updated 3.7 years ago by
Mike Smith
★ 6.6k • written 3.7 years ago by
eric.kern13
▴ 20
4
votes
13
replies
2.9k
views
Speeding up of DelayedArray::write_block()
HDF5Array
DelayedArray
updated 21 months ago by
Hervé Pagès
16k • written 3.8 years ago by
Koki
▴ 10
4
votes
3
replies
1.5k
views
Temporal directory setting for DelayedArray
HDF5Array
DelayedArray
4.0 years ago
Koki
▴ 10
2
votes
3
replies
1.5k
views
Generating a DelayedArray with a size greater than .Machine$integer.max
bit64
HDF5Array
DelayedArray
updated 4.0 years ago by
Hervé Pagès
16k • written 4.1 years ago by
Koki
▴ 10
3
votes
5
replies
1.9k
views
Block processing matrices of different dimensions with DelayedArray
HDF5Array
DelayedArray
updated 4.0 years ago by
Hervé Pagès
16k • written 4.1 years ago by
Pedro Baldoni
▴ 40
0
votes
1
reply
1.2k
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray
HDF5Array
DelayedArray
4.1 years ago
Koki
▴ 10
9
votes
8
replies
2.1k
views
Processing time of blockApply and DelayedArray
DelayedArray
HDF5Array
updated 4.0 years ago by
Hervé Pagès
16k • written 4.1 years ago by
Pedro Baldoni
▴ 40
2
votes
4
replies
1.6k
views
`aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size aware?
HDF5Array
DelayedArray
4.1 years ago
Koki
▴ 10
1
vote
2
replies
1.5k
views
Error: C stack usage of HDF5Array
DelayedArray
HDF5Array
4.2 years ago
Koki
▴ 10
2
votes
6
replies
2.0k
views
"dim<-" against on-disk arrays
DelayedArray
TileDBArray
HDF5Array
updated 4.1 years ago by
Hervé Pagès
16k • written 4.2 years ago by
Koki
▴ 10
6
votes
6
replies
2.3k
views
Is it possible to create `HDF5Array` Delayed Arrays from HDF5 files hosted on S3?
TileDBArray
HDF5Array
MultiAssayExperiment
4.3 years ago
Thomas Sandmann
▴ 90
4
votes
2
replies
1.8k
views
HDF5Array Single cell experiment objects - can on-disk files change?
HDF5Array
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
sarah.williams1
▴ 40
1
vote
4
replies
2.4k
views
Trouble loading 'lumi' package
lumi
illumina
hdf5array
updated 6.9 years ago by
James W. MacDonald
68k • written 6.9 years ago by
Alexander Azarian
▴ 30
12
votes
15
replies
4.6k
views
error with HDF5Array
hdf5array
biocparallel
updated 7.1 years ago by
Mike Smith
★ 6.6k • written 7.2 years ago by
cath
▴ 30
4
votes
1
reply
3.2k
views
Using HDF5Array writeHDF5Array for a large dgCMatrix
HDF5Array
dgCMatrix
updated 7.2 years ago by
Aaron Lun
★ 28k • written 7.3 years ago by
rubi
▴ 110
23 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 Design controlling for gender
by
back up
• 0
Great discussion on Bioconductor package troubleshooting! For researchers and bioinformatics teams needing financial support for computatio…
Comment: Bioconductor code browser time out
by
Mike Smith
★ 6.6k
It's not just you. The site seems to be getting numerous requests from a wide variety of IP addresses. They don't seem to be webcrawlers (…
Comment: Many transcripts missing from tx2gene created from Ensembl GTF file
by
Nicholas
• 0
I was under the impression that we want to summarize to gene names, not gene IDs. I didn't see a gene name key.
Comment: Bioconductor code browser time out
by
dcwalker
• 0
Is this happening again? I've been getting "Gateway Timeout" messages more often than not when trying to use the code browser over the last…
Comment: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t
by
James W. MacDonald
68k
1.) That's one way you can do the test. The heuristic way the hypergeometric test is explained in basic stats is to envision an urn that co…
Votes
Comment: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t
Answer: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t
Answer: DESeq2 LRT: Testing Effects of Treatment1, Treatment2, and Their Interaction in
Answer: Is voomByGroup available in limma?
Answer: limma duplicateCorrelation appropriate where some blocks cross condition and som
Awards
• All
Popular Question
to
Konstantinos Yeles
▴ 90
Popular Question
to
shepherl
4.1k
Popular Question
to
caroline.zanchi
▴ 10
Popular Question
to
James W. MacDonald
68k
Popular Question
to
Alexander
• 0
Locations
• All
United States,
43 minutes ago
EMBL Heidelberg,
3 hours ago
WEHI, Melbourne, Australia,
7 hours ago
The city by the bay,
7 hours ago
United States,
8 hours ago
Traffic: 1212 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6