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Answer: Retrieve Salmon transcript quantification file from recount3 by Leonardo Collado Torres ★ 1.1k

Hi K, The Salmon quantification files are not available at https://aws.amazon.com/marketplace/pp/prodview-t3rflz3f557jq or JHU IDIES Sci…

Answer: error from library(IlluminaHumanMethylationMSAmanifest) by James W. MacDonald 68k

Thanks for the heads-up! I have fixed the typos and the updated version should be available for download in the next few days.

Comment: GBCC2025: New Scholarship Opportunities Available! by Brian • 0

That's fantastic news! The new scholarship opportunities for the Galaxy Bioconductor Community Conference (GBCC2025) are a great chance for…

Answer: Source / binary version mismatch for rGADEM by shepherl 4.1k

There is a mismatch because the source version of the package is failing. See the build report: https://bioconductor.org/checkResults/relea…

Comment: Heatmap of the Count Matrix by Brown • 0

Thanks for clarifying that this is just a starting point [papa's games][1] for data exploration. I'll definitely dive in and use the best…

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Answer: DESeq2 empirical bayes: variance of the prior for log fold changes (LFC)

Answer: Deseq2 paired sample in the design is considered as "batch"?

DESeq2 empirical bayes: variance of the prior for log fold changes (LFC)

Answer: Heatmap of the Count Matrix

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Popular Question to Vincent J. Carey, Jr. 6.7k