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Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long by mohammedtoufiq91 ▴ 10

@gordonsmyth thanks. Sorry for the confusion, Yes, that's correct, the standard hg38.fa file I used is the GENCODE GRCh38.p14 genome FASTA…

Comment: problem for finding soft power for constructing network in WGCNA algorithm by few.snipe.cfkf • 0

Exploring the challenges of selecting the right soft power in WGCNA highlights the delicate balance between sensitivity and specificity whe…

Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long by Gordon Smyth 52k

No, you haven't quite answered my question yet. I am not asking about the genome FASTA file (hg38.fa) that is input to STAR but rather abou…

Comment: Testing KO vs WT at day4/day14 with interactions in edgeR by Noah • 0

I originally tried to include my full question and code in one post, but there was an upload problem. I am therefore posting the code separ…

Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long by mohammedtoufiq91 ▴ 10

@gordonsmyth thank you for the response. I created the STAR index using the standard `hg38.fa` file and merged gtf file. Yes, I run Salmo…

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Answer: heatmap with batch effect

Answer: Limpa Pipeline Order

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