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2
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5
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922
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scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
scuttle
updated 6 months ago by ★ 28k • written 6 months ago by ▴ 10
2
votes
1
reply
802
views
Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Comparison
scran bluster scater scuttle
updated 15 months ago by ★ 4.9k • written 15 months ago by ★ 1.6k
0
votes
3
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1.9k
views
Is logNormCounts log2 normalised counts as default?
scuttle scater
updated 22 months ago by ★ 4.9k • written 22 months ago by • 0
1
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0
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2.6k
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Convert SpatialExperiment Object to Seurat Object
scuttle scater seurat SpatialExperiment
2.4 years ago cathalgking ▴ 10
0
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1
reply
1.1k
views
cell_count column in SpatialExperiment Object
scuttle scater SpatialExperiment
updated 2.4 years ago by ▴ 160 • written 2.5 years ago by ▴ 10
2
votes
2
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1.9k
views
scuttle:: librarySizeFactors returning non-finite values
normalizeCounts scran librarySizeFactors scuttle scRNAseq
3.3 years ago behr201 • 0
3
votes
3
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2.3k
views
Ensuring reproducibility in BiocParallel SingleCellExperiment workflows
scater SingleCellExperiment BiocParallel scuttle scran
3.7 years ago enricoferrero ▴ 680
4
votes
5
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3.5k
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scuttle::aggregateAcrossCells() crashes R on large SingleCellExperiment
scran SingleCellExperiment scuttle scater
updated 4.5 years ago by ★ 28k • written 4.5 years ago by ▴ 680
5
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4
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8.3k
views
scRNA-seq pseudo-bulk differential expression analysis with pseudobulkDGE()
scran scater scuttle
updated 4.9 years ago by ★ 28k • written 4.9 years ago by ▴ 680
9 results • Page 1 of 1
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Comment: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t by caroline.zanchi ▴ 10
It all makes sense now : I was being superficially AI-splained. I was really wondering what was the deal with that link. I guess I felt val…
Answer: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t by James W. MacDonald 68k
The comment you responded to comes from a bot (which you can always tell because it has a link embedded that leads to a game site or whatev…
Answer: TopGO question by James W. MacDonald 68k
Please note that `genesInTerm` provides exactly what one might expect a function with that name might provide - the genes that are annotate…
Comment: TopGO question by Hannah • 0
df <- data.frame( Gene = results2$Gene, PV = results2$`Pr(>|t|)`, Estimate = results2$Estimate ) rownames(df) <- df$Gene valid_gene…
Comment: Many transcripts missing from tx2gene created from Ensembl GTF file by Abbott • 0
Thank you so much
Votes
Answer: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t
Answer: DESeq2 LRT: Testing Effects of Treatment1, Treatment2, and Their Interaction in
Answer: Is voomByGroup available in limma?
Answer: limma duplicateCorrelation appropriate where some blocks cross condition and som
Comment: Ensembl 114 / Ensembl Genomes 61 has been released!
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