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Answer: Starting with a clean bioconductor rstudio container by ATpoint ★ 4.9k

Disclaimer: I am a mere (but daily) Docker user, by no means an expert on the internals of Docker. There is to my knowledge no caching of …

Answer: Starting with a clean bioconductor rstudio container by James W. MacDonald 68k

The help for `docker run` indicates that the `--rm` argument (as one might imagine) removes the docker container after running. I would ima…

Comment: TopGO question by James W. MacDonald 68k

You need to provide some example code and output that shows what you are seeing.

Answer: ChAMP pipeline error (champ.import) by macdonaldfrench7286566 • 0

Confirm your pd file has the exact required column headers for ChAMP to find the IDAT paths (e.g., Slide, Array, Basename, or explicit path…

Answer: Problem in Chip-seq data analysis using MACS3 by ATpoint ★ 4.9k

This standalone tool is not part of Bioconductor, you would be better off asking at biostars.org or bioinformatics reddit. Generally, two t…

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Answer: Is voomByGroup available in limma?

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Popular Question to James W. MacDonald 68k