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20 result(s) for 'author#Barend Mons' within BMC

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  1. This article collects opinions from leading scientists about how text mining can provide better access to the biological literature, how the scientific community can help with this process, what the next steps...

    Authors: Russ B Altman, Casey M Bergman, Judith Blake, Christian Blaschke, Aaron Cohen, Frank Gannon, Les Grivell, Udo Hahn, William Hersh, Lynette Hirschman, Lars Juhl Jensen, Martin Krallinger, Barend Mons, Seán I O'Donoghue, Manuel C Peitsch, Dietrich Rebholz-Schuhmann…
    Citation: Genome Biology 2008 9(Suppl 2):S7
    Content type: Research Published on:

    This article is part of a Supplement: Volume 9 Supplement 2

  4. The NETTAB 2012 workshop, held in Como on November 14-16, 2012, was devoted to "Integrated Bio-Search", that is to technologies, methods, architectures, systems and applications for searching, retrieving, inte...

    Authors: Paolo Romano, Frédérique Lisacek and Marco Masseroli
    Citation: BMC Bioinformatics 2014 15(Suppl 1):S1
    Content type: Introduction Published on:

    This article is part of a Supplement: Volume 15 Supplement 1

  5. WikiProteins enables community annotation in a Wiki-based system. Extracts of major data sources have been fused into an editable environment that links out to the original sources. Data from community edits c...

    Authors: Barend Mons, Michael Ashburner, Christine Chichester, Erik van Mulligen, Marc Weeber, Johan den Dunnen, Gert-Jan van Ommen, Mark Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel Packer, Roberto Pacheco, Suzanna Lewis, Alfred Berkeley, William Melton…
    Citation: Genome Biology 2008 9:R89
    Content type: Software Published on:

  6. Computational Biology needs computer-readable information records. Increasingly, meta-analysed and pre-digested information is being used in the follow up of high throughput experiments and other investigation...

    Authors: Barend Mons
    Citation: BMC Bioinformatics 2005 6:142
    Content type: Commentary Published on:

  7. Ensuring the FAIRness (Findable, Accessible, Interoperable, Reusable) of data and metadata is an important goal in both research and industry. Knowledge graphs and ontologies have been central in achieving thi...

    Authors: Lars Vogt
    Citation: Journal of Biomedical Semantics 2025 16:18
    Content type: Research Published on:

  8. Many efforts exist to design and implement approaches and tools for data capture, integration and analysis in the life sciences. Challenges are not only the heterogeneity, size and distribution of information ...

    Authors: Marco Masseroli, Barend Mons, Erik Bongcam-Rudloff, Stefano Ceri, Alexander Kel, François Rechenmann, Frederique Lisacek and Paolo Romano
    Citation: BMC Bioinformatics 2014 15(Suppl 1):S2
    Content type: Review Published on:

    This article is part of a Supplement: Volume 15 Supplement 1

  10. The COVID-19 pandemic has challenged healthcare systems and research worldwide. Data is collected all over the world and needs to be integrated and made available to other researchers quickly. However, the var...

    Authors: Núria Queralt-Rosinach, Rajaram Kaliyaperumal, César H. Bernabé, Qinqin Long, Simone A. Joosten, Henk Jan van der Wijk, Erik L.A. Flikkenschild, Kees Burger, Annika Jacobsen, Barend Mons and Marco Roos
    Citation: Journal of Biomedical Semantics 2022 13:12
    Content type: Research Published on:

  11. The FAIR principles recommend the use of controlled vocabularies, such as ontologies, to define data and metadata concepts. Ontologies are currently modelled following different approaches, sometimes describin...

    Authors: César H. Bernabé, Núria Queralt-Rosinach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Barend Mons, Annika Jacobsen and Marco Roos
    Citation: Journal of Biomedical Semantics 2023 14:21
    Content type: Review Published on:

  12. Use of the FAIR principles (Findable, Accessible, Interoperable and Reusable) allows the rapidly growing number of biomedical datasets to be optimally (re)used. An important aspect of the FAIR principles is me...

    Authors: Daphne Wijnbergen, Rajaram Kaliyaperumal, Kees Burger, Luiz Olavo Bonino da Silva Santos, Barend Mons, Marco Roos and Eleni Mina
    Citation: BMC Medical Informatics and Decision Making 2025 25(Suppl 1):211
    Content type: Research Published on:

    This article is part of a Supplement: Volume 25 Supplement 1

  13. Data from high throughput experiments often produce far more results than can ever appear in the main text or tables of a single research article. In these cases, the majority of new associations are often arc...

    Authors: Eleni Mina, Mark Thompson, Rajaram Kaliyaperumal, Jun Zhao, van Eelke der Horst, Zuotian Tatum, Kristina M Hettne, Erik A Schultes, Barend Mons and Marco Roos
    Citation: Journal of Biomedical Semantics 2015 6:5
    Content type: Research Published on:

  14. Comparative analysis of expression microarray studies is difficult due to the large influence of technical factors on experimental outcome. Still, the identified differentially expressed genes may hint at the ...

    Authors: Rob Jelier, Peter AC 't Hoen, Ellen Sterrenburg, Johan T den Dunnen, Gert-Jan B van Ommen, Jan A Kors and Barend Mons
    Citation: BMC Bioinformatics 2008 9:291
    Content type: Methodology article Published on:

  15. High-throughput experiments, such as with DNA microarrays, typically result in hundreds of genes potentially relevant to the process under study, rendering the interpretation of these experiments problematic. ...

    Authors: Rob Jelier, Guido Jenster, Lambert CJ Dorssers, Bas J Wouters, Peter JM Hendriksen, Barend Mons, Ruud Delwel and Jan A Kors
    Citation: BMC Bioinformatics 2007 8:14
    Content type: Research article Published on:

  16. Massive text mining of the biological literature holds great promise of relating disparate information and discovering new knowledge. However, disambiguation of gene symbols is a major bottleneck.

    Authors: Bob JA Schijvenaars, Barend Mons, Marc Weeber, Martijn J Schuemie, Erik M van Mulligen, Hester M Wain and Jan A Kors
    Citation: BMC Bioinformatics 2005 6:149
    Content type: Research article Published on:

  17. An ever-increasing amount of data on a person’s daily functioning is being collected, which holds information to revolutionize person-centered healthcare. However, the full potential of data on daily functioni...

    Authors: Esther R.C. Janssen, Ilona M. Punt, Johan van Soest, Yvonne F. Heerkens, Hillegonda A. Stallinga, Huib ten Napel, Lodewijk W. van Rhijn, Barend Mons, Andre Dekker, Paul C. Willems and Nico L.U. van Meeteren
    Citation: BMC Medical Informatics and Decision Making 2024 24:184
    Content type: Research Published on:

  18. Huntington’s disease (HD) is a devastating brain disorder with no effective treatment or cure available. The scarcity of brain tissue makes it hard to study changes in the brain and impossible to perform longi...

    Authors: Eleni Mina, Willeke van Roon-Mom, Kristina Hettne, Erik van Zwet, Jelle Goeman, Christian Neri, Peter A.C. ’t Hoen, Barend Mons and Marco Roos
    Citation: Orphanet Journal of Rare Diseases 2016 11:97
    Content type: Research Published on:

  19. Scientific publications are documentary representations of defeasible arguments, supported by data and repeatable methods. They are the essential mediating artifacts in the ecosystem of scientific communicatio...

    Authors: Tim Clark, Paolo N Ciccarese and Carole A Goble
    Citation: Journal of Biomedical Semantics 2014 5:28
    Content type: Research Published on:

  20. Open Science is encouraged by the European Union and many other political and scientific institutions. However, scientific practice is proving slow to change. We propose, as early career researchers, that it i...

    Authors: Andrea Farnham, Christoph Kurz, Mehmet Ali Öztürk, Monica Solbiati, Oona Myllyntaus, Jordy Meekes, Tra My Pham, Clara Paz, Magda Langiewicz, Sophie Andrews, Liisa Kanninen, Chantal Agbemabiese, Arzu Tugce Guler, Jeffrey Durieux, Sarah Jasim, Olivia Viessmann…
    Citation: Genome Biology 2017 18:221
    Content type: Comment Published on: