Azospirillum brasilense Sp245, complete

genome
NCBI Reference Sequence: NC_016617.1
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LOCUS

NC_016617

3348 bp

DNA

linear

BCT 25-DEC-

2012
DEFINITION

Azospirillum brasilense Sp245, complete genome.

ACCESSION

NC_016617 REGION: 1424932..1428279

VERSION

NC_016617.1

DBLINK

Project: 162161

GI:392380513

BioProject: PRJEA162161
KEYWORDS

complete genome; complete replicon.

SOURCE

Azospirillum brasilense Sp245

ORGANISM

Azospirillum brasilense Sp245

Bacteria; Proteobacteria; Alphaproteobacteria;

Rhodospirillales;
Rhodospirillaceae; Azospirillum.
REFERENCE
AUTHORS

1
Wisniewski-Dye,F., Borziak,K., Khalsa-Moyers,G., Alexandre,G.,
Sukharnikov,L.O., Wuichet,K., Hurst,G.B., McDonald,W.H.,
Robertson,J.S., Barbe,V., Calteau,A., Rouy,Z., Mangenot,S.,
Prigent-Combaret,C., Normand,P., Boyer,M., Siguier,P.,

Dessaux,Y.,
Elmerich,C., Condemine,G., Krishnen,G., Kennedy,I.,
Paterson,A.H.,
Gonzalez,V., Mavingui,P. and Zhulin,I.B.
TITLE

Azospirillum genomes reveal transition of bacteria from aquatic

to
terrestrial environments
JOURNAL
PUBMED
REFERENCE

PLoS Genet. 7 (12), E1002430 (2011)

22216014
2

(bases 1 to 3348)

CONSRTM

NCBI Genome Project

TITLE

Direct Submission

JOURNAL

Submitted (16-FEB-2012) National Center for Biotechnology

Information, NIH, Bethesda, MD 20894, USA

REFERENCE

(bases 1 to 3348)

AUTHORS

Borziak,K.

TITLE

Direct Submission

JOURNAL

Submitted (21-JUN-2011) to the INSDC. Microbiology, University

of
Tennessee, M437 1414 Cumberland Avenue, TN, 37996, USA
COMMENT

PROVISIONAL REFSEQ: This record has not yet been subject to

final
NCBI review. The reference sequence is identical to HE577327.
Annotation results relative to BLAST similarities, COG
assignations, enzymatic function prediction (PRIAM software),
TMHMM
and SignalP predictions, and synteny conservation (Syntonizer
software) are available in the MicroScope annotation system
http://www.genoscope.cns.fr/agc/microscope.
Accession numbers for all the replicons in this genome project:
HE577327-HE577333.
COMPLETENESS: full length.
FEATURES
source

Location/Qualifiers
1..3348
/organism="Azospirillum brasilense Sp245"
/mol_type="genomic DNA"
/strain="Sp245"
/db_xref="taxon:1064539"

gene

1..3348
/locus_tag="AZOBR_100146"
/db_xref="GeneID:13105000"

CDS

1..3348
/locus_tag="AZOBR_100146"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on

presence of
conserved amino acid motif, structural feature or
limited
homology; Product type e : enzyme"
/codon_start=1
/transl_table=11
/product="putative alpha amylase"
/protein_id="YP_005031193.1"
/db_xref="GI:392381996"
/db_xref="GeneID:13105000"
/translation="MATAGPRIYNLFPTLVGPMRDWAGHLPRIQGMGFDWLFLNPIHY
PGFSGSLYAVKDYYRLHDRIQGGAPEHPDELLRGFIAEAGRHGQSVMLDLVINHTAKD
AILVGEHPDWYRRDANGDLYSPRAVDPVDPSRVTIWGDLAMLDYERAEVRAGLTDYWT
RYLRHYIGLGVKGFRCDAAYQIPAEVWKTLIERSREVDPQVKFFAETLGCTVEQVRDL
CGAGFDFLFNSAKWWDFKSDWLLDQYDEFRWIAPSIAFPESHDTDRLAAEVGSQDTER

LAAQLKMHYLFAASFSTGVMMPVGFEYGFTRKLDVVNTTPDDWEQPKLDLTGFIGAVN
AMKAESPALNVEGPQRRVTSPHNPVIGLIRETSGWANGSGEGCSVLLINPDENQPHAI
DPGPLLASTGGGFADFEDVTPEAAPLPFEPGRDLRLRPLEMRVFRARPAQSRPIELNH
LGERGAEHDSATRAWMDELASRRVTIENVYPELDGGRFPVKRVVGDVMEVWADIYTDG
TFVLGAAVTYRPVDEEEWREVPMTFVDNDRWMGKLPLTRNTRYQYSILAWRDVWESWR
ADFKKKNDAGLDVGLELIEGRRFVEHAVGLNEGEGRAALERVVERMNSLQGAELTAYA
LSDEPRQAMATYGERQYLSRYGCDLEVYVDRTAARYSAWFEIFPRSASPDPSRPGTFD
DVSTMLPFIRGMGFDVLYFPPIHPIGRSFRKGRNNTLNPGPNDPGVPYAIGASEGGHA
DIDPMIGDFEGFRRLVKEARRHGIEIALDFAVQCSPDHPWIKSHPQWFYWRPDGTIRY
AENPPKKYQDIVNVSFYRESYPDLWYALRDVVLFWCDEGVRIFRVDNPHTKPFPFWEW
MIREVQDRFPDALFLAEAFTRPKLMRRLAKIGFTQSYSYFTWRNTKAELTEYLTELTQ
GESKDYMQPNFFANTPDILPPILVHGGRPAHMMRAVLAGTLSGVYGLYAPYFVCEADP
YPGKEEYNHSEKYEIRHWDWNKPGNIVDYVTRLNRIRAENPALHKFTNLKFYNAYDDN
ILLYGKMTESKDNVILIAVNLDPHNGHGGTIEVPLWELGLDDGAHVQVEDLFTGQRFT
WIGKFQHVWLDPQQNPAAIWRIRPPGR"
ORIGIN
1 atggccaccg ccggaccgcg catctacaac ctgtttccca cgctcgtcgg cccgatgcgc
61 gactgggccg ggcatctgcc ccgcatccag ggcatgggct tcgactggct gttcctgaac
121 ccgatccatt atccgggctt ttccggcagc ctctacgccg tgaaggacta ctaccggctg
181 cacgaccgca tccagggcgg cgcaccggag catccggacg agctgctgcg cggcttcatc
241 gccgaggcgg ggcggcacgg ccagtcggtg atgctcgacc tcgtcatcaa ccacaccgcc
301 aaggacgcga tcctggtcgg cgagcatccg gactggtacc ggcgcgacgc caacggcgac
361 ctctacagcc cgcgcgccgt cgacccggtg gacccgtcgc gggtgaccat ctggggcgac
421 ctcgccatgc tcgactacga gcgggcggag gtccgggcgg ggctgaccga ctattggacg
481 cggtacctgc gccattacat cgggctcggg gtgaagggct tccgctgcga cgccgcctac
541 cagatcccgg cggaggtgtg gaagacgctg atcgagcgct cccgcgaggt tgacccgcag
601 gtcaagttct tcgccgagac gctgggctgc acggtggaac aggtgcgcga cctctgcggc
661 gcgggcttcg acttcctgtt caacagcgcc aaatggtggg acttcaagtc cgactggctg
721 ctcgaccagt acgacgagtt ccgctggatc gctccgtcga tcgcctttcc ggaaagccac
781 gacaccgacc gtctggcggc ggaggtcggc agccaggaca ccgagcggct ggccgcccag
841 ttgaagatgc actacctgtt cgccgcctcc ttctcgaccg gcgtaatgat gccggtgggg
901 ttcgaatacg gcttcacgcg caagctcgac gtggtgaaca cgacgccgga cgattgggag
961 cagccgaagc tggacctgac cggcttcatc ggcgcggtca acgccatgaa ggccgagagc
1021 ccggcgctga acgtcgaagg gccgcaacgc cgcgtgacct cgccccacaa cccggtgatc
1081 gggctgatcc gcgagaccag cggctgggcc aacgggagcg gggaggggtg ctccgtcctg
1141 ctcatcaacc ccgacgagaa ccagccgcac gccatcgacc ccggcccgct gctggccagc
1201 accggcggcg gcttcgccga cttcgaggac gtgaccccgg aggcggcacc gctgcccttc
1261 gagccgggcc gcgacctgcg cctgcgcccg ctggagatgc gcgtcttccg cgcccgaccg
1321 gcgcagagcc gccccatcga gctgaaccat ctgggcgagc gcggagcgga gcacgactcc
1381 gccacccgcg cctggatgga cgagctggcc tcccgccgcg tcaccatcga gaacgtctat
1441 cccgagcttg acggcgggcg cttcccggtc aagcgggtgg tcggcgacgt gatggaggtg
1501 tgggccgaca tctacaccga cggcaccttc gtcctgggcg ccgccgtgac ctaccgcccg
1561 gtcgacgagg aggaatggcg cgaggtgccc atgaccttcg tcgacaacga ccgctggatg
1621 ggcaagctgc cgctgacccg caacacgcgc taccagtaca gcatcctggc gtggcgcgac

1681 gtgtgggaga gctggcgcgc cgacttcaag aagaagaacg acgccgggct ggacgtcggg

1741 ctggagctga tcgagggccg acgcttcgtc gagcacgcgg tcgggctgaa tgagggggag
1801 ggccgcgccg cgctggagcg ggtggtcgag cggatgaaca gcctccaggg agcggagctg
1861 accgcctacg ccctgtcgga cgaaccgcgc caagccatgg cgacgtatgg cgagcggcag
1921 tatctgtccc gctacggctg cgacctggag gtctatgtgg accgcaccgc ggcccgctac
1981 tccgcgtggt tcgagatctt cccgcgctcg gcctcgccgg acccgtcgcg gcccggcacc
2041 ttcgacgacg tgtcgaccat gctgcccttc atccggggca tgggcttcga cgtgctgtat
2101 tttccgccga tccacccgat cggtcgcagc ttccgcaagg ggcgcaacaa cacgctgaac
2161 cccggcccga acgatcccgg cgtgccctac gccatcggtg cctcggaggg cgggcacgcc
2221 gacatcgacc cgatgatcgg cgatttcgag ggcttccgcc ggctggtcaa ggaggcgcgg
2281 cggcacggca tcgagatcgc gctcgatttc gccgtccagt gctcccccga ccatccctgg
2341 atcaaatcgc acccgcagtg gttctactgg cgccccgacg gcacgatccg ctacgccgag
2401 aacccgccga agaagtacca ggacatcgtc aacgtcagct tctaccgcga atcctacccg
2461 gacctgtggt acgcgctgcg cgacgtggtg ctgttctggt gcgacgaggg ggtgcgcatc
2521 ttccgcgtcg acaacccgca caccaagccc ttccccttct gggaatggat gatccgcgag
2581 gtgcaggacc gcttccccga cgcgctgttc ctggctgagg ccttcacccg gcccaagctg
2641 atgcggcggc tggcgaagat cggcttcacc cagtcctaca gctacttcac gtggcgcaac
2701 accaaggcgg agctgaccga gtatctgacg gagctgaccc agggcgagtc caaggactac
2761 atgcagccca acttcttcgc caacacgccg gacatcctgc cgccgatcct ggtccatggc
2821 gggcggcccg cccacatgat gcgtgccgtg ctggccggga ccttgtcggg tgtctacggc
2881 ctctatgccc cgtatttcgt ctgcgaggcc gacccctatc cgggcaagga ggagtacaac
2941 cactccgaaa aatacgagat ccggcactgg gattggaaca agcccggcaa catcgtcgat
3001 tacgttacgc ggctgaacag gatccgtgcg gagaacccgg cgcttcataa gttcacgaac
3061 ctgaagttct acaacgccta tgacgacaac atcctgctct acggcaagat gacggagagc
3121 aaggacaacg tgatcctgat cgcggtgaac ctcgacccgc acaacggcca tggcggcacc
3181 atcgaagttc cgttgtggga actggggctg gacgacggcg cgcatgtcca ggtggaggat
3241 ctgttcaccg gccagcgctt cacctggatc ggcaagttcc agcacgtctg gctggacccg
3301 cagcagaacc cggcggcgat ctggcgcatc cgcccgccgg ggcggtga

Azospirillum brasilense Sp245 plasmid

AZOBR_p3, complete sequence
NCBI Reference Sequence: NC_016595.1
FASTA Graphics
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LOCUS

NC_016595

1536 bp

DNA

linear

BCT 25-DEC-

2012
DEFINITION

Azospirillum brasilense Sp245 plasmid AZOBR_p3, complete

sequence.
ACCESSION

NC_016595 REGION: complement(287827..289362)

VERSION

NC_016595.1

DBLINK

Project: 162161

GI:392378906

BioProject: PRJEA162161
KEYWORDS

complete genome; complete replicon.

SOURCE

Azospirillum brasilense Sp245

ORGANISM

Azospirillum brasilense Sp245

Bacteria; Proteobacteria; Alphaproteobacteria;

Rhodospirillales;
Rhodospirillaceae; Azospirillum.
REFERENCE
AUTHORS

1
Wisniewski-Dye,F., Borziak,K., Khalsa-Moyers,G., Alexandre,G.,
Sukharnikov,L.O., Wuichet,K., Hurst,G.B., McDonald,W.H.,
Robertson,J.S., Barbe,V., Calteau,A., Rouy,Z., Mangenot,S.,
Prigent-Combaret,C., Normand,P., Boyer,M., Siguier,P.,

Dessaux,Y.,
Elmerich,C., Condemine,G., Krishnen,G., Kennedy,I.,
Paterson,A.H.,
Gonzalez,V., Mavingui,P. and Zhulin,I.B.
TITLE

Azospirillum genomes reveal transition of bacteria from aquatic

to
terrestrial environments
JOURNAL
PUBMED
REFERENCE

PLoS Genet. 7 (12), E1002430 (2011)

22216014
2

(bases 1 to 1536)

CONSRTM

NCBI Genome Project

TITLE

Direct Submission

JOURNAL

Submitted (16-FEB-2012) National Center for Biotechnology

Information, NIH, Bethesda, MD 20894, USA

REFERENCE
AUTHORS

(bases 1 to 1536)

Borziak,K.

TITLE

Direct Submission

JOURNAL

Submitted (21-JUN-2011) to the INSDC. Microbiology, University

of
Tennessee, M437 1414 Cumberland Avenue, TN, 37996, USA
COMMENT

PROVISIONAL REFSEQ: This record has not yet been subject to

final
NCBI review. The reference sequence is identical to HE577330.
Annotation results relative to BLAST similarities, COG
assignations, enzymatic function prediction (PRIAM software),
TMHMM
and SignalP predictions, and synteny conservation (Syntonizer
software) are available in the MicroScope annotation system
http://www.genoscope.cns.fr/agc/microscope.
Accession numbers for all the replicons in this genome project:
HE577327-HE577333.
COMPLETENESS: full length.
FEATURES
source

Location/Qualifiers
1..1536
/organism="Azospirillum brasilense Sp245"
/mol_type="genomic DNA"
/strain="Sp245"
/db_xref="taxon:1064539"
/plasmid="AZOBR_p3"

gene

1..>4
/locus_tag="AZOBR_p310299"
/db_xref="GeneID:13103356"

CDS

1..>4
/locus_tag="AZOBR_p310299"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported

genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004986360.1"
/db_xref="GI:392379201"
/db_xref="GeneID:13103356"
/translation="MKGKRMGNTVRGDAVPPRGNGTSGSTAEHERLRECQEHGAGWKK
WGPYLSERQWGTVREDYSESGDAWNYFPHDHARSRAYRWGEDGLAGICDDRQILCFAL
ALWNGQDPILKERLFGLTNNEGNHGEDVKEYYFYLDSTPTHSYMKYLYKYPQGAYPYD
DLVHTNRRRTKQDPEYELLDTGVFDQDRYFDVFIEYAKASADDLLIRITVSNRGPEPA

TLHVLPTLWFRNTWSWRDGAKRPVLRQAAPGVIAASHPDLGGRFLSCDGAAALLFTEN
ETNTERLFDTPNRIPYVKDGIGNYVVHGREDAVNPEHSGTKVSAHYPITVGAGQSVAL
RLRLHDGETADPFGNDFDVVMEARRREADEFYATVVPPSLDADAANVMRQALAGMLWS
KQFYYYDVDRWLEERGSDRLSPQRHAPRNEHWHHMENAHILSMPDKWEYPWYAAWDLA
FHVLALTMVDENFGKQQLDLMLRHRYQHPSGQIPAYEWNFGDVNPPVHAWATIFTFRL
EAARRGQGDVEWLERSFHKLLLNFTWWVNRKDRTGSNVFEGGFLGLDNIGVFDRSAPL
PTGGYLEQADGTAWMALFCQNMLEIAAELAMSRPAYADMALKFFEHFLWIATSMLRAG
GGTGMWDEADGFFYDVLRLPDGRTERLKVRSMVGLLPLCAVTVFDGEMLEKYPEIRQN
ARRFLEARPELRAFIHDPVTCGQGGRRLAAILDESKLRRVLAAMLDEKEFLSPYGIRA
LSRHHAEHPYVFRVGTQEYRVSYLPAESDSGMFGGNSNWRGPIWMPVNGLIIRALLQY
YLYYGDAFTIECPTGSGRHMTLYQVAEELARRLTSIFIRDANDRRPVYGGTRKFQEDP
HWRDNLLFYEYFHGDNGAGIGASHQTGWTGIIARIMHLFATATAEQMLELGKKAATLE
AEP"
gene

1..1536
/locus_tag="AZOBR_p310298"
/db_xref="GeneID:13103355"

CDS

1..1536
/locus_tag="AZOBR_p310298"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="alpha amylase catalytic region"
/protein_id="YP_004986359.1"
/db_xref="GI:392379200"
/db_xref="GeneID:13103355"

/translation="MNDELGAPAPLSADGGIDRPTPCPSLYQINTRVWLTKLSVSLGR
PATLDDVPDTELDHIAGAGFDWIWLLSVWSTGLAGQHISRTDQAWRREFEETLPDLRE
EDIAGSGFAITGYTVHPGLGGKVALARLRDRLRQRGLQLMLDFVPNHTALDHPWIEDH
PEYYVSGTELDLARAPQNYIWVKGSRGDRLLAHGRDPYFSGWPDTLQLNYGNPATQEA
MIGELLTIAEQCDGVRCDMAMLVLPDVFARTWGLPAPAFWPAAIMRIRERVPRFRFMA
EVYWDLEWTMLQQGFDYAYDKRLYDRLRAGQARPVREHLQAGPDDQKKLARFLENHDE
PRAAATLATGMHEAAAVITYLSPGLRFFHQGQFEGCKKRISPHLVRAPIEPQNEALKH
FYCELLAVLRQPTVRNGEWRLLSCTPAWESNWTWDSCIASCWEGSNGQRILVAVNYAA
HQSQCYVRLPWDDLAGGTVRLRDLIGSASYDREGNALISRGLYLDLPPWGRHVFKVSW
TIE"
ORIGIN
1 gtgaacgacg aactgggcgc gccggcgcca ctgtcagcgg acgggggtat cgacaggccg
61 acgccgtgcc cttcgcttta tcagatcaac acgcgtgtct ggctgacgaa actgtccgtg
121 tctcttggcc ggccagccac gctggacgat gttcccgaca ccgagctcga tcacatcgcc
181 ggagctggct tcgactggat ctggctgctc agcgtgtgga gcaccggact ggcgggacag
241 catatttcgc gcaccgatca ggcatggcgc cgcgagttcg aggagacgct tccagacctt
301 cgcgaggagg acatcgccgg ctccgggttt gcgatcaccg gatatacggt gcatccgggg

361 cttggcggga aggttgcgct ggcacggctg cgtgaccggc ttcggcagcg tgggctacag

421 ctgatgctgg atttcgtccc gaatcatacc gcgttggatc acccgtggat cgaggaccat
481 cctgaatact acgtctctgg aaccgagttg gatctggcgc gagcaccgca gaattacata
541 tgggtcaaag ggagccgcgg cgaccggctc ctggcccacg gtcgcgaccc gtacttctct
601 ggctggcccg acacgctcca actaaactac ggcaacccgg cgacgcagga ggcgatgatc
661 ggcgagctgc tgacgatagc cgagcaatgc gatggtgtgc gctgcgacat ggcgatgctc
721 gtgctgcctg acgtattcgc gcggacctgg ggactgccgg cgcccgcgtt ctggcccgcc
781 gcaattatgc gcatccgcga gcgggtcccg aggtttcgct tcatggccga ggtctactgg
841 gatttggaat ggaccatgct gcagcagggc ttcgactatg cctacgacaa gcggctgtac
901 gaccgcctgc gtgccgggca ggcccggccg gttcgggagc acctccaggc tgggcccgat
961 gaccagaaga aactcgcccg gtttctcgag aaccacgacg agccccgcgc cgccgcgact
1021 ttggcaactg gaatgcatga ggccgccgct gtcatcacgt atctttctcc gggcctgcgg
1081 ttctttcatc agggacagtt cgagggatgt aagaagcgga tctcgccgca cctcgttcgt
1141 gccccgatcg agccccaaaa cgaggcgctg aagcacttct actgcgaact cctggccgtt
1201 ctccggcaac cgactgtgcg gaatggcgag tggcgtctcc tcagttgcac accggcctgg
1261 gagagcaatt ggacgtggga ttcctgtatt gcgtcatgct gggaaggaag caatggccag
1321 agaatcctcg tcgccgtcaa ctacgctgcc catcagagcc agtgctatgt ccgcctccca
1381 tgggatgatc tcgcaggtgg tacagtgcgt ctccgtgatt tgataggctc cgccagctac
1441 gatcgagaag ggaacgccct catttcacga ggactttatc tcgacctgcc gccgtgggga
1501 cggcatgtgt tcaaagtttc ctggacaatc gaataa
//

Azospirillum lipoferum 4B plasmid AZO_p3,

complete sequence
NCBI Reference Sequence: NC_016623.1
FASTA Graphics
The following popper user interface control may not be accessible. Tab to
the next button to revert the control to an accessible version.
Destroy user interface controlGo to:
LOCUS

NC_016623

3321 bp

DNA

linear

BCT 27-SEP-

2012
DEFINITION

Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence.

ACCESSION

NC_016623 REGION: complement(212837..216157)

VERSION

NC_016623.1

DBLINK

Project: 82343

GI:374293519

BioProject: PRJNA82343
KEYWORDS

complete genome; complete replicon.

SOURCE

Azospirillum lipoferum 4B

ORGANISM

Azospirillum lipoferum 4B
Bacteria; Proteobacteria; Alphaproteobacteria;

Rhodospirillales;
Rhodospirillaceae; Azospirillum.
REFERENCE
AUTHORS

(bases 1 to 3321)

Wisniewski-Dye,F., Borziak,K., Khalsa-Moyers,G., Alexandre,G.,

Sukharnikov,L.O., Wuichet,K., Hurst,G.H., McDonald,W.H.,
Robertson,J.S., Barbe,V., Calteau,A., Rouy,Z., Mangenot,S.,
Prigent-Combaret,C., Normand,P., Boyer,M., Siguier,P.,

Dessaux,Y.,
Elmerich,C., Condemine,G., Krishnen,G., Kennedy,I.,
Paterson,A.H.,
Gonzalez,V., Mavingui,P. and Zhulin,I.B.
TITLE

Azospirillum genomes reveal transition of bacteria from aquatic

to
terrestrial environments
JOURNAL
PUBMED
REFERENCE

PLoS Genet. 7 (12), E1002430 (2011)

22216014
2

(bases 1 to 3321)

CONSRTM

NCBI Genome Project

TITLE

Direct Submission

JOURNAL

Submitted (11-JAN-2012) National Center for Biotechnology

Information, NIH, Bethesda, MD 20894, USA

REFERENCE

(bases 1 to 3321)

AUTHORS

Genoscope -,C.E.A.

TITLE

Direct Submission

JOURNAL

Submitted (15-NOV-2011) to the INSDC. Genoscope - Centre

National
de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail :
[email protected] - Web : www.genoscope.cns.fr)
COMMENT

PROVISIONAL REFSEQ: This record has not yet been subject to

final
NCBI review. The reference sequence is identical to FQ311871.
Annotation results relative to BLAST similarities, COG
assignations, enzymatic function prediction (PRIAM software),
TMHMM
and SignalP predictions, and synteny conservation (Syntonizer
software) are available in the MicroScope annotation system
http://www.genoscope.cns.fr/agc/microscope.
COMPLETENESS: full length.
FEATURES
source

Location/Qualifiers
1..3321
/organism="Azospirillum lipoferum 4B"
/mol_type="genomic DNA"
/strain="4B"
/db_xref="taxon:862719"
/plasmid="AZO_p3"

gene

1..3321
/locus_tag="AZOLI_p30209"
/db_xref="GeneID:11556053"

CDS

1..3321
/locus_tag="AZOLI_p30209"
/function="6.11 : Sugars"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on

presence of
conserved amino acid motif, structural feature or
limited
homology; Product type pe : putative enzyme"
/codon_start=1
/transl_table=11
/product="putative alpha-amylase"
/protein_id="YP_005040735.1"
/db_xref="GI:374293712"
/db_xref="GeneID:11556053"
/translation="MNIVGPRIYNLFPTLAGPVRDWAGHLPRIQGMGFDWIFLNPIHQ
PGFSGSLYAVKDPYRLHDALRGGSQESDDELLRRFIGEAGAHGQSVMMDFVINHTSRD
ALLVDRHPDWYKRGADGDLHRPGAVDPNDSSLVTVWGDLASLDYDRAESRAGLIGYWS

DYLRHYIGLGVKGFRCDAAYQVPAEVWKSLIDAAHAVNPEVKFFAETLGCTVEQVREL
CGAGFDFLFNSAKWWDFKADWLLDQYEEFRWIAPSIAFPESHDTDRLAAEVGSQDAVR
LAAQMKMHYLFAASFSTGVLMPVGYEYGFTRKLDVVRSSPADWEQPKLDLSGFIGAVN
AMKAATPALNVEGPQRRVTSPHSPVLGLIRQVDGAALDQPDGCAILVLNPDENRPHTL
DVGPILAATGGTYEAFEDVTPEAEPLPMEPGTPMMLRPMELRVFRARAARSHPVELHD
VEEREWMDSMAAGRMTIENVYPELDGGRFAIKRAVGDLMEVWADIYTDGTFVLAASVM
YKADGDDEWSEAPMRLHENDRWVGRVPLTRNARYTYSIEAWRDVWESWRADFKKKVDA
GMVVDLELVEGRRFVEQALDLNHGDGRAALEAVIERMQSLAGREAIDYALSDEPRRVM
ALYGERQYKSRYVRELEVYVDRTAGAYSAWFEIFPRSASPDPSRPGTFDDVVNLLPMV
RDMGFDVLYFPPIHPIGRAFRKGRNNTLNPGPDDPGVPYAIGGEEGGHDAIDPMIGDF
DSFRRLVREAKRHGIEIALDFAVQCSPDHPWVKEHPHWFYWRPDGTIRYAENPPKKYQ
DIVNVSFYRQSYPDLWYALRDVVLMWCKEGVRIFRVDNPHTKPFPFWEWMIREVQDRY
PDALFLAEAFTRPKLMKRLAKVGFTQSYSYFTWRTTKAELTEYLTELTQGESREYMRP
NFFANTPDILPPTLTQGGRPAHMMRAVLAATLAGVYGLYGPYLLCEAEAYPGKDEYNH
SEKYELRHWDWNQPGNIRDYVTAINRIRRENPALQQFINLRFYNAFDDNILLYGKMTA
AKDNVILIAVNLDPHNGHGGTIEVPLWELGLPDGAHVQVEDLFSGHRFTWIGKFQHVW
LDPHRNPAAIWRIVPPGV"
ORIGIN
1 atgaacatcg tcggaccgcg gatctacaac ctgtttccga ccctggcggg tcccgtccgc
61 gattgggccg ggcacctgcc gcggattcag gggatgggat tcgactggat cttcctgaac
121 ccgatccacc agccgggatt ctccggcagc ctctatgccg tcaaggaccc ctatcgcctg
181 cacgacgccc tgcgcggcgg gtcgcaggag agcgacgacg agctgctgcg ccgcttcatc
241 ggtgaagccg gtgcgcatgg ccagtcggtg atgatggatt tcgtcatcaa ccacacctcg
301 cgcgacgcgc tgctggtcga ccgccatccc gactggtaca agcgcggcgc ggatggcgac
361 ctgcaccgtc cgggcgcggt cgatcccaac gacagcagcc tcgtcacggt ctggggcgac
421 ctcgcctcgc tggattacga ccgggcggag tcgcgcgccg ggctgatcgg ctactggtcg
481 gactatctgc gccattacat cggactgggc gtgaagggct tccgctgcga cgccgcctat
541 caggtgccgg cagaggtgtg gaagagcctg atcgacgccg cccacgccgt gaacccggag
601 gtgaagttct tcgccgagac gctgggctgt acggtggagc aggtgcgcga gctgtgcggc
661 gccggcttcg acttcctgtt caacagcgcc aaatggtggg acttcaaggc cgactggctg
721 ctggaccagt atgaggagtt ccgctggatc gccccgtcca tcgcctttcc ggaaagccac
781 gacaccgacc gtctggcggc ggaggtcggc agccaggatg cggtgcggct cgccgcccag
841 atgaagatgc attacctgtt cgccgccagc ttctccaccg gcgtcttgat gccggtcggc
901 tatgaatacg gcttcacccg caagctggac gtggtgcgca gcagccccgc cgactgggaa
961 cagccgaagc tggacctgtc cggcttcatc ggcgccgtca atgccatgaa ggccgcaacc
1021 ccggccctga acgtcgaggg gccgcagcgc cgcgtgacct cgccccacag cccggtgctg
1081 gggctgatcc ggcaggtgga cggcgccgcc ctcgaccagc ccgacggctg cgccatcctg
1141 gtgctgaacc cggacgagaa ccggccgcac accctggacg tcggccccat tctggcggcc
1201 accggcggca cctatgaggc gttcgaggat gtgacgccgg aggccgaacc gctgccgatg
1261 gaacccggca cgccgatgat gctgcggccg atggaactgc gcgttttccg cgcccgcgcc
1321 gcccgcagcc acccggtcga actccatgac gtggaggagc gggaatggat ggactccatg
1381 gccgccggcc gcatgaccat cgagaacgtc tatccggaac tcgacggcgg ccgcttcgcc
1441 atcaagcggg cggtcggcga cctgatggag gtgtgggcag acatctacac cgacggcacc

1501 ttcgtgctgg ccgcgtcggt catgtacaag gcggacggcg acgacgagtg gagcgaagcg

1561 ccgatgcggc tgcacgagaa cgaccgctgg gtcggccgcg tgccgctgac ccgcaatgcc
1621 cgctacacct acagcatcga agcctggcgc gacgtctggg aaagctggcg cgccgacttc
1681 aagaagaagg tcgatgccgg catggtcgtc gatctggaac tggtggaggg ccgacgcttc
1741 gtcgagcagg cgctggacct gaaccatggt gacggccgtg ccgcgctgga ggcggtgatc
1801 gagcggatgc agtcgctggc cggccgcgag gccatcgact atgccctgtc ggacgagccg
1861 cgccgtgtca tggcgctcta tggcgagcgg caatacaagt cgcgctatgt gcgcgaactg
1921 gaggtctatg tcgaccgcac cgccggcgcc tattcggcat ggttcgagat ctttccgcgg
1981 tccgcctcgc ccgatccgtc gcgtcccggt acattcgacg acgtggtgaa tctgctgccc
2041 atggtgcgcg acatgggctt cgacgtgctg tatttcccgc cgatccaccc catcggccgt
2101 gccttccgca agggcaggaa caacacgctg aaccccggtc cggacgatcc cggcgtgccc
2161 tatgccatcg gcggcgaaga gggcgggcac gacgccatcg acccgatgat cggcgatttc
2221 gacagcttcc gccggctggt gcgcgaggcc aagcgccacg gcatcgagat cgcgctggat
2281 ttcgccgtcc agtgctcgcc cgatcatccc tgggtgaagg agcatccgca ctggttctac
2341 tggcggcccg acggcaccat ccgctatgcc gagaacccgc cgaagaagta ccaggacatc
2401 gtgaatgtca gcttctaccg ccaatcctat ccggacctgt ggtacgcgct gcgcgacgtg
2461 gtgctgatgt ggtgcaagga gggggtgcgc atcttccgcg tcgacaaccc gcacaccaag
2521 cccttcccct tctgggaatg gatgatccgc gaggtgcagg accgctaccc cgacgccctg
2581 ttcctggccg aggccttcac ccggcccaag ctgatgaagc ggctggccaa ggtcggcttc
2641 acccagtcct acagctattt tacctggcgc accaccaagg cggagctgac cgagtatctg
2701 accgagctga cgcagggtga atcgcgggaa tacatgcggc cgaacttctt cgccaacacc
2761 cccgacatcc tgccgccgac cctgacccag ggtgggcggc cggcgcacat gatgcgggcg
2821 gttctggcgg cgacgctggc cggcgtctac ggcctttatg gtccctatct gctgtgcgag
2881 gcggaagcct atcccggcaa ggatgagtac aaccattcag agaagtacga gctccggcac
2941 tgggactgga accagcccgg caacatccgc gactatgtga ccgccatcaa ccgcatccgc
3001 cgcgaaaatc cggcgttgca gcagttcatc aacctgcgct tctacaacgc cttcgacgac
3061 aacatcctgc tctacggcaa gatgacggcg gccaaggaca acgtgatcct gatcgcggtg
3121 aacctcgacc cccacaacgg ccatggcggg accatcgagg tgccgctgtg ggaactcggt
3181 ctgcccgacg gcgcccatgt ccaggtggag gatctgttca gcggccaccg cttcacctgg
3241 atcggcaagt tccagcatgt ctggctggat cctcaccgca accccgcggc gatctggcgg
3301 atcgtgccgc cgggggtgtg a
//

Azospirillum sp. B510 plasmid pAB510c,

complete sequence
NCBI Reference Sequence: NC_013857.1
FASTA Graphics
LOCUS

NC_013857

3321 bp

DNA

linear

BCT 13-OCT-

2011
DEFINITION

Azospirillum sp. B510 plasmid pAB510c, complete sequence.

ACCESSION

NC_013857 REGION: complement(347624..350944)

VERSION

NC_013857.1

DBLINK

Project: 46085

GI:288961527

BioProject: PRJNA46085
KEYWORDS

SOURCE

Azospirillum sp. B510

ORGANISM

Azospirillum sp. B510

Bacteria; Proteobacteria; Alphaproteobacteria;

Rhodospirillales;
Rhodospirillaceae; Azospirillum.
REFERENCE
AUTHORS

1
Kaneko,T., Minamisawa,K., Isawa,T., Nakatsukasa,H., Mitsui,H.,
Kawaharada,Y., Nakamura,Y., Watanabe,A., Kawashima,K., Ono,A.,
Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M.,
Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and
Sato,S.

TITLE

Complete Genomic Structure of the Cultivated Rice Endophyte

Azospirillum sp. B510

JOURNAL
PUBMED
REFERENCE

DNA Res. 17 (1), 37-50 (2010)

20047946
2

(bases 1 to 3321)

CONSRTM

NCBI Genome Project

TITLE

Direct Submission

JOURNAL

Submitted (17-FEB-2010) National Center for Biotechnology

Information, NIH, Bethesda, MD 20894, USA

REFERENCE

(bases 1 to 3321)

AUTHORS

Kaneko,T. and Sato,S.

TITLE

Direct Submission

JOURNAL

Submitted (22-DEC-2008) Contact:Shusei Sato Kazusa DNA Research

Institute, Department of Plant Genome Research; 2-6-7
Kazusa-kamatari, Kisarazu, Chiba 292-0812, Japan URL
:http://genome.kazusa.or.jp/rhizobase/

COMMENT

PROVISIONAL REFSEQ: This record has not yet been subject to

final
NCBI review. The reference sequence is identical to AP010949.
strain information:
Azospirillum sp. strain B510 was deposited as JCM 14679 in
RIKEN
BioResource Center.
Phone: +81-48-467-9560; E-mail: [email protected]:
http://www.jcm.riken.jp/
reference:
Elbeltagy, A., K. Nishioka, T. Sato, H. Suzuki, B. Ye, T.
Hamada,
T. Isawa, H. Mitsui, and K.Minamisawa (2001):
Endophytic colonization and in planta nitrogen fixation by a
Herbaspirillum sp. isolated from wild rice species. Appl.
Environ.
Microbiol. 67:5285-5293.
COMPLETENESS: full length.
FEATURES
source

Location/Qualifiers
1..3321
/organism="Azospirillum sp. B510"
/mol_type="genomic DNA"
/strain="B510"
/db_xref="taxon:137722"
/plasmid="pAB510c"

gene

1..3321
/locus_tag="AZL_c02820"
/db_xref="GeneID:8794759"

CDS

1..3321
/locus_tag="AZL_c02820"
/codon_start=1
/transl_table=11
/product="alpha-amylase-related protein"
/protein_id="YP_003452119.1"
/db_xref="GI:288961809"
/db_xref="GeneID:8794759"

/translation="MSIVGPRIYNLFPTLAGPVRDWAGHLPRIQGMGFDWIFLNPIHQ
PGFSGSLYAIKDPYRLHDALRGGSSDGDDELLRRFIAEAAAHGQSVMMDLVINHTARD
ALLVEHHPDWYKRGPDGDLHRPGAVDPNDTAHVTVWGDLASLDYDRAESRAGLVGYWS
DYLRHHIGLGVRGFRCDAAYQVPMEVWRSLIDAAHAVNPEVKFFAETLGCTVEQVREL
CGAGFDFLFNSAKWWDFKADWLLDQYEAFRWIAPSVAFPESHDTDRLAAEVGSQDAVR
LAAQLKMHYLFAASFSTGVMMPVGFEYGFTRKLDVVRSSPADWEPPKLDLTGFIGAVN
AMKAATPALNVEGPQRRVTSPHNPVLGLIRQVDGAALDQPDACAILLLNPDENRAHDV

DVGPVLAATGGTYEAFEDVTPEAEPLAMEPGAAMTLRPMELRVFRARAARSHAVELHE
VEEREWMDSLAAGRMTIEAVYPELDGGRFAIKRAVGDVMEVWADIYTDGTFVLAASVL
YRADGDDDWSEAPMRLHENDRWVGRVPLTRNARYTYSIEAWRDVWESWRADFKKKVDA
GLVVDLELAEGRHFVEQSLDLNLGDGGAALQAVIGRMRELSGREAIDYALSDEPRRVM
ARYGERQYRSRYVRDLEVHVDRTAGAYSAWFEIFPRSASPDPSRPGNFDDVVNLLPMV
RDMGFDVLYFPPIHPIGRAFRKGRNNTLNPGPDDPGVPYAIGAEEGGHDAIDPMIGDF
DGFRRLVREARRHGIEIALDFAVQCSPDHPWVKEHPHWFYWRPDGSIRYAENPPKKYQ
DIVNVSFYRQSYPGLWYALRDVVLMWCGEGVRIFRVDNPHTKPFPFWEWMIREVQDRY
PDALFLAEAFTRPKLMKRLAKVGFTQSYSYFTWRNTKQELTEYLTELTQGESKEYMRP
NFFANTPDILPRILTEGGRAAHMMRAVLAATLAGVYGLYGPYLLCEAEAYPGKEEYNH
SEKYEIRHWDWNQPGNIRDYVTAINRIRRENPALQQFTNLRFYNAFDDNILLYGKMTA
TKDNVILIAVNLDPHNSHGGTIEVPLWELGLSDGAHVQVEDLFSGHRFTWIGKFQHVW
LDPQRNPAAIWRIVPPGG"
ORIGIN
1 atgagcatcg tcggaccgcg catctacaac ctgtttccga ccctggccgg tcccgtccgc
61 gattgggcgg gacatctgcc gcggatccag gggatgggtt tcgattggat cttcctgaac
121 ccgatccatc agcccggctt ctcgggcagc ctctatgcca tcaaggatcc gtaccggctg
181 catgacgccc tgcgcggcgg atcctccgac ggcgatgacg agttgctgcg ccgattcatc
241 gcggaggccg cggcgcatgg ccagtcggtg atgatggatc tcgtcatcaa ccacaccgcg
301 cgcgacgccc tgctggtcga gcatcacccc gactggtaca agcgcggtcc cgacggcgat
361 ctgcaccgcc ccggcgccgt cgatcccaac gacactgccc atgtcacggt gtggggcgat
421 ctcgcctccc tcgactatga ccgggcggag tcgcgggccg gactggtcgg ctactggtcc
481 gactatctgc gccatcatat cgggctgggc gtgcgggggt tccgctgcga tgccgcctat
541 caggttccaa tggaggtgtg gagaagcctg atcgatgccg cccatgcggt gaatccggag
601 gtgaaattct tcgccgagac gttgggctgc acggtggagc aggtgcgcga gctatgcggc
661 gccggcttcg atttcctgtt caacagcgcc aaatggtggg atttcaaggc cgactggctg
721 ctggaccagt atgaggcgtt ccgctggatc gcaccgtccg tcgcctttcc cgaaagccat
781 gacaccgacc ggctggcggc ggaggtcggc agccaggacg ccgtgcggct ggccgcccag
841 ttgaagatgc attacctgtt cgccgccagc ttctccaccg gtgtgatgat gccggtgggg
901 ttcgaatatg gcttcacccg caagctggat gtggtgcgca gcagccccgc cgattgggaa
961 ccgccgaagc tggacctgac cggcttcatc ggtgccgtca acgcgatgaa ggccgccacc
1021 ccggcgctga atgtcgaggg gccgcagcgc cgcgtcacct cgccccacaa tccggtgctg
1081 gggctgatcc ggcaggtgga tggcgccgcc ctcgaccagc ccgacgcctg cgcgatcctg
1141 ttgctgaatc cggacgagaa ccgcgcgcat gatgtggatg tcggtccggt gctggcagcc
1201 accggcggca catacgaggc gttcgaggac gtgacgccgg aggccgaacc gttggcgatg
1261 gagccgggtg cggccatgac gctgcgcccg atggaactgc gcgttttccg cgcccgcgcc
1321 gcccgcagcc atgcggtcga actgcatgaa gtggaggagc gggagtggat ggattccctc
1381 gccgccggcc gcatgaccat cgaggccgtc tatccggagc tggacggcgg tcgtttcgcc
1441 atcaagcggg cggtcggcga cgtgatggag gtttgggccg acatctatac cgacggcacc
1501 ttcgtgctgg cggcctccgt cctctaccgg gcggatggcg atgacgactg gagcgaggcg
1561 ccgatgcgcc tccacgagaa tgaccgctgg gtcggccggg tgccgctgac ccgcaacgcc
1621 cgctacacct acagcatcga ggcgtggcgc gacgtgtggg aaagctggcg cgccgatttc
1681 aagaaaaagg tcgatgccgg actggtcgtc gatctggaac tggccgaggg ccgccatttc

1741 gtcgaacagt cgctggacct gaaccttggt gacgggggcg cggctctcca ggcggtgatc

1801 gggcgcatgc gggagctttc cggccgggag gccatcgatt acgccctgtc ggacgagccg
1861 cgccgtgtca tggcgcggta tggtgagcgg caatacaggt cgcgctatgt ccgggatctg
1921 gaggtccatg tcgaccgcac cgccggcgcc tattcggctt ggttcgagat cttcccgcgt
1981 tcggcctcgc ccgatccgtc acggccgggc aatttcgacg acgtggtgaa cctgctgccg
2041 atggtgcgcg acatggggtt cgatgtgctg tatttcccgc cgatccaccc catcggccgc
2101 gccttccgca agggcaggaa caacacgctg aatcccggcc ccgacgatcc cggcgtgccc
2161 tatgccatcg gtgccgagga gggcggacac gacgccatcg acccgatgat cggcgatttc
2221 gacggcttcc gccggctggt gcgcgaggcc aggcggcacg ggatcgagat cgcgctggat
2281 ttcgccgtcc aatgctcgcc cgaccatccc tgggtgaagg agcatccgca ctggttttat
2341 tggcggcccg acggcagcat ccgctacgcc gagaatccgc cgaagaagta tcaggacatc
2401 gtcaatgtca gcttctatcg ccagtcctat cccggcctgt ggtacgcgct gcgcgatgtg
2461 gtgctgatgt ggtgcggcga gggcgtgcgc atcttccgcg tcgacaaccc gcacaccaag
2521 ccctttccct tctgggaatg gatgatccgc gaagtgcagg accgctaccc cgacgcgctg
2581 ttcctggccg aggccttcac ccggcccaag ctgatgaagc ggctggccaa ggtcggcttc
2641 acccagtcct acagctattt cacttggcgg aacaccaagc aggagttgac cgagtatctg
2701 acggagctga cgcaggggga gtcgaaggag tatatgcggc ccaacttctt cgccaacacg
2761 ccggacatcc tgcccaggat tctgaccgag ggcggacggg cggcccacat gatgcgggcg
2821 gttctggcgg cgacgctggc cggcgtctac ggtctttatg gtccctatct gctgtgcgag
2881 gccgaggcct atcccggcaa ggaggaatac aaccattcag agaaatacga gatccggcat
2941 tgggattgga accagcccgg caacatccgc gactatgtga ccgccatcaa ccgcatccgc
3001 cgcgagaatc cggcgcttca gcaattcacc aacctgcgtt tctacaacgc cttcgacgac
3061 aacatcctgc tctacggcaa gatgacggcg acgaaggaca atgtgatcct gatcgcggtc
3121 aatctcgatc cccacaacag ccatggcggg accatcgagg tgccgctgtg ggaattgggc
3181 ctgtccgacg gcgcccatgt ccaggtcgag gatctgttca gtggccaccg cttcacctgg
3241 atcggcaagt tccagcatgt ctggctcgat ccccaacgca acccggcggc gatctggcgg
3301 atcgtgccgc cgggggggta g
//