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Exploitation of Fungi
Chapter
derma spp., the colonized plant and fungal pathogens pp. 291-309
Abstract
Trichoderma-based biofungicides are a reality in agriculture, with
more than 50 formulations available today as registered products world-
wide. Several strategies have been applied to identify the main genes and
compounds involved in this complex cross-talk between the fungal antag-
onist and the microbial pathogen, as mediated by the plant. Proteome and
genome analysis have greatly enhanced our ability to conduct holistic and
genome-based functional studies. We have identified and determined the
role of a variety of novel genes and gene-products, including ABC trans-
porters, enzymes and other proteins that produce or act as novel elicitors
of induced systemic resistance, proteins recognized by the plant as avir-
ulence factors, as well as molecules that generally activate the antagonistic
activity in Trichoderma spp. We have cloned mycoparasitism-related pro-
moters and used them in combination with GFP and other markers to
study the interaction in vivo and in situ between Trichoderma and the
fungal pathogen or the plant. Finally, we have transgenically improved
the ability of the antagonist to kill other microbes and to activate plant
defence mechanisms.
Introduction
Plant diseases caused by pathogenic fungi infections represent a
major limiting factor for the cultivation and the conservation of agri-
cultural plants of interest. The consequences of parasite attack result in
both quantitative and qualitative reduction of crop production, large
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292 S. L. Woo et al.
economic losses and represent a risk for human and animal health due to
the accumulation of residues in the environment and mycotoxin contam-
inants in food products. Chemical control of phytopathogenic fungi is
limited not only by economical cost, but also by concerns about the impact
of continued applications on consumer health and the environment. In
addition, applications of methyl bromide, the most frequently used soil
fumigant (also causing a reduction of the ozone level in the atmosphere),
will be completely banned in Europe in the next few years, which provides
a strong impulse for the development of ‘biological’ methods based on, for
instance, antagonistic microbes and soil solarization for disease manage-
ment. Alternatively, new technologies for plant defence can be proposed
that are based on the utilization of transgenic plants and microorganisms,
the application of antagonist microbes (fungi or bacteria) capable of
controlling important diseases or of useful compounds originating from
these microorganisms.
In particular, fungi of the genus Trichoderma are among the most
effective biopesticides applied for plant protection against fungal diseases,
both in traditional and organic farming. The fungi are commercially
produced, and several patents protect their use (Harman & Kubicek,
1998; Kubicek & Harman, 1998). Biopesticides based on antagonistic
Trichoderma strains are used for biocontrol of phytopathogenic fungi
that cause diseases including root and crown rot of vegetables, seedling
damping-off, vascular wilt, take-all of cereals, root infection of fruit
trees, mildew of grapes and other crops, monilia disease, and soft rot of
pome and stone fruit etc. The availability and diffusion of these products
is much more widespread than commonly known, and Trichoderma is
also listed both in Europe and USA as a pesticide permitted for use in
organic farming. The size of the biopesticide market based on antagonistic
fungi is modest compared to chemicals, but it is steadily growing and
is expected to increase significantly with the introduction of these pro-
ducts in India, China, northern Africa and central Asia. In addition to the
registered products (a few dozen formulations), a large variety of non-
registered bioprotectants, biostimulators and biofertilizers based on
Trichoderma or other antagonistic fungi are being sold everywhere
(Lorito et al., 2004). For instance, commercial products based on the
fungus Trichoderma spp. include Binab TTM (T. harzianum and T. poly-
sporum registered in Sweden, UK, USA), Bio FungusTM (Trichoderma
spp. in Belgium), EcoSOMTM (T. viride in India), RootShieldTM T-22G,
T-22 Planter Box, Bio-Trek (T. harzianum in USA and north Europe),
Root ProTM (T. harzianum in Israel), SupresivitTM (T. harzianum in the
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Although competition for space has not been clearly demonstrated in the
case of Trichoderma, there is evidence showing that it plays a role in
biocontrol when these antagonists establish their dominance in a specific
environmental niche. T. harzianum is able to control the attack of Botrytis
cinerea on grapes by colonizing blossom tissue and excluding the pathogen
from its infection site (Gullino, 1992). The mechanisms of the competition
for nutrients such as carbon, nitrogen and iron, root and seed exudates
have been better defined. Competition for carbon and nitrogen between
T. harzianum and F. oxysporum f. sp. melonis on rhizosphere colonization
has been identified as the most important mechanism involved in the
biocontrol of this vascular disease. It was demonstrated that all the other
possible modes of action played little or no role in this case (Sivan & Chet,
1989). Mechanisms by which antagonists parasitize other fungi have been
thoroughly studied by using Trichoderma spp. Many studies, recently
performed by using different gene expression reporter systems, have
visualized the presence and the activity of propagules of the antagonist
in different fungal structures of the pathogen, including sclerotia (Lu
et al., 2004; Mach et al., 1999).
Many studies indicate that Trichoderma spp. act not only as antagonists
against plant pathogens, but also as agents to alter plant disease suscept-
ibility. The ability of Trichoderma species to stimulate defence responses
in the host plant has been clearly observed: in cotton with strains of
T. virens (Howell et al., 2000), in cucumber with some strains of T. harzianum,
in pepper (Sid Ahmed et al., 2000) and in tobacco (Chang et al., 1997)
against various phytopathogens including Rhizoctonia solani and some
Phytophthora species. The Trichoderma treatments to different plant
hosts caused the increase of ex-novo synthesis of compounds involved in
active defence mechanisms, such as the production of terpenoids (Howell
et al., 2000), capsidiol (Sid Ahmed et al., 2000), as well as peroxidases,
beta-glucosidase, cellulase and chitinase activities (Yedidia et al., 2000).
For example, in grape cell suspension cultures, an elicitor produced by
T. viride was able to activate defence responses resulting in cellular
necrosis and an increase in resveratrol concentration, an important phyto-
alexin produced following B. cinerea and Plasmopara viticola infec-
tions (Calderon et al., 1993; Dai et al., 1995).
There are many aspects of the molecular mechanisms that Trichoderma
utilizes in its relationship with plants and other microbes that are
not understood due to the complexity of the processes involved, but
also because many of the recent and potent tools available for investi-
gating molecular-genetic and biochemistry techniques (such as EST
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A novel understanding of the three-way interaction 299
and Trichoderma, have this capacity to promote plant growth and to induce
resistance to pathogens. The first report of ISR caused by Trichoderma was
observed on tomato, lettuce, pepper, bean and tobacco plants treated with
T. harzianum strain T39 in the biocontrol of B. cinerea (De Meyer et al.,
1998). Since then, numerous studies on the induction of systemic resistance
in various plants to a variety of pathogens by the application of different
Trichoderma species has been reported, including R. solani and some
Phytophthora spp. (see Harman et al., 2004 for a review). The treatments
with the biocontrol agent were found to alter the production of substances
implicated in the active defence mechanisms; an increase in the production
of substances including peroxidases, beta-glucosidases, cellulases and chiti-
nases activities (Yedidia et al., 2000), or the ex-novo synthesis of compounds
such as terpenoids (Howell et al., 2000) and capsidiol (Sid Ahmed et al.,
2000). In grape cell cultures, an elicitor produced by T. viride activated
defence responses that resulted in cellular necrosis and accumulation of
resveratrol (Calderon et al., 1993; Dai et al., 1995).
In order to discern if the biocontrol effect of T. virens on soilborne
diseases was due to localized or systemic acquired resistance, as an alter-
native to direct mycoparasitism by the antagonist, it was necessary to use
mutants of Trichoderma with different antibiotic or mycoparasitic capa-
bilities. The biocontrol of R. solani on cotton seedlings was found to
depend upon the ability of the antagonist strain to induce the production
of phytoalexins in the plant such as hemoglossypol, deoxyhemoglossypol
and glossypol (Howell et al., 2000). These results provide a new insight into
the mechanisms involved in biocontrol and suggest that induced resistance
may, in some cases, play a more important role than direct action by an
antagonist on pathogen control (Harman et al., 2004). The activation of
induced resistance may confer protection for a longer period of time and
against a wider range of pathogens, including viruses (Harman et al.,
2004). For example, an application of T. harzianum to tomato roots was
found to reduce significantly leaf infection caused by Alternaria solani
almost three months later.
Induced resistance in plants caused by the interaction with Trichoderma
may involve different molecules (Fig. 16.1). It was noted that these fungi
produced a xylanase of 22 kDa that induced a localized resistance reaction
(Lotan & Fluhr, 1990). Several peptides and proteins produced by T. virens
were found to have elicitor activity and to induce the biosynthesis of
terpenoid phytoalexin and peroxidase activity in cotton (Howell et al.,
2000). Our preliminary results indicate that T. harzianum produces pro-
teins that may be homologous to the products of the avirulence genes Avr4
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300 S. L. Woo et al.
and Avr9 found in the tomato pathogen Cladosporium fulvum. These pro-
teins, acting as race or pathovar specific elicitors, induce resistance responses
in plants having the matching resistance genes (Dangl & Jones, 2001).
An additional genre of molecules that are capable of inducing resistance
may originate from the interaction Trichoderma has with pathogens and
plants. Cell wall degrading enzymes secreted by the antagonist have activ-
ity both on the cell walls of the fungal pathogens as well as the plants,
Antibiotics Antibiotics
Trichoderma
Trichoderma
host
host
CWDEs CWDEs elicitors
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A novel understanding of the three-way interaction 301
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A novel understanding of the three-way interaction 303
strain T. atroviride P1 was transformed with the gene encoding for the Avr4
protein of Cladosporium fulvum, a leaf pathogen of tomato, under a strong
constitutive or inducible promoter. The Avr4-secreting Trichoderma mutants
over-expressing the transgene were applied to the seeds of tomato cultivars
containing and not containing the corresponding Cf4 resistance gene.
Fewer plants emerged from the Cf4 containing seeds, and these seedlings
were stunted and less healthy than those emerging from the non-Cf4-
containing seeds, which did not differ from the untreated controls. When
Trichoderma avr mutants were applied to the roots of mature Cf4 plants,
necrotic zones rapidly appeared on the root and leaf surface that resembled
HR (Ruocco & Lorito, unpublished data). From a biotechnological view-
point, avr genes from biocontrol fungi are attractive because they can
potentially provide protection against a large spectrum of pathogens, by
transforming plants or beneficial microbes with the Trichoderma avr genes,
or ectopically applying the avr products to stimulate plant resistance.
The third type of elicitors are molecular compounds released from the
pathogen and the plant cell wall by the action of Trichoderma cell wall
degrading enzymes. These molecules not only stimulate antagonistic activ-
ity in the fungus by activating the mycoparasitic gene expression cascade,
but they also act as elicitors of plant defence when plant cells are exposed
to them or when injected in the root and leaf surface (Woo & Lorito,
unpublished data, Figure 16.1). Some of these compounds were found to
be comprised of short oligosaccharides made of two types of monomers
either with or without an amino acid residue. This provides a novel
possibility of using the enzymes secreted by Trichoderma, rather than the
fungus itself, to induce ISR in the plant. This enzyme treatment may
stimulate the activity of resident or introduced Trichoderma populations
by the release of fungal inducers and activate the ISR system in the plant
by the release of plant elicitors, as well as having an antimicrobial effect
in the application zone.
Finally, the understanding of the mechanism of interaction between
Trichoderma and the plant has provided for the first time the opportunity
to genetically increase the ability of a T. atroviride strain to induce ISR. We
were able to over-express a glucose oxidase gene from Aspergillus niger in
Trichoderma strain P1, and obtained mutants that, in vitro and in vivo
experiments, performed much better than the wild type both as a myco-
parasite and as an ISR inducing agent (Brunner et al., 2005). In this case,
bean seeds treated with the spores from the mutant produced plants that
were more resistant to leaf infection by B. cinerea when compared to those
treated with the wild type Trichoderma. Probably, the high glucose oxidase
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304 S. L. Woo et al.
T
c
T
A B
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A novel understanding of the three-way interaction 305
deeper rooting compared to untreated controls and were also more toler-
ant to drought (Harman & Björkman, 1998). In addition, it was shown
that this effect is accentuated when other beneficial root colonizing micro-
organisms, such as mycorrhyzal fungi, were also applied. Increased root
development caused by the antagonists may also produce a significant
increase in product yield, as observed in maize (Harman & Björkman,
1998). Trichoderma may provide an advantage to crops that are grown in
less than optimum field conditions with various biotic stresses and
thus substantially improve production. However, it should be noted that
the results differed with the lines of maize tested, and in some cases
Trichoderma even caused a reduction in plant growth and yield (Harman
& Björkman, 1998). This was also found to be the case with tomato in
which the different genetic background of the eight tested plant varieties
reacted differently to a strain of T. atroviride and one of T. harzianum
(Fig. 16.4 C and D) (Ruocco & Lorito, unpublished). This suggests that
more studies are required to clarify the mechanisms involved in the
T c
C D
c
T(P1) T(T22) T(P1) T(T22)
c
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306 S. L. Woo et al.
Conclusions
The mechanisms by which Trichoderma spp. are able to control
plant diseases or stimulate resistance in the plant are just starting to be
elucidated. In the complex association between this fungal antagonist, the
plant and pathogens there is continuous molecular cross-talk maintained
among the participants. The presence or absence of a member will alter the
secretion of different compounds, biochemical and biological activities,
perception or receptivity to the released by-products and consequent
responses of antagonism by Trichoderma and/or defence response by the
plant. The beneficial effects to the plant are not limited to disease control,
but also include increased growth and development. The potential of
applications utilizing Trichoderma as a bioagent (fungicide, stimulant,
protectant, etc.), and its by-products, alone or in combination with exist-
ing technology and commercial products, is expanding as our knowledge
increases about the mechanisms involved in this three-way relationship.
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