Chapter 4 Bound May 9
Chapter 4 Bound May 9
Chapter 4
Amazonian ecosystems and their ecological
functions
The Science Panel for the Amazon is an unprecedented initiative convened under the
auspices of the United Nations Sustainable Development Solutions Network (SDSN). The
SPA is composed of over 200 preeminent scientists and researchers from the eight
Amazonian countries, French Guiana, and global partners. These experts came together
to debate, analyze, and assemble the accumulated knowledge of the scientific
community, Indigenous peoples, and other stakeholders that live and work in the Amazon.
The Panel is inspired by the Leticia Pact for the Amazon. This is a first-of-its-kind Report
which provides a comprehensive, objective, open, transparent, systematic, and rigorous
scientific assessment of the state of the Amazon’s ecosystems, current trends, and their
implications for the long-term well-being of the region, as well as opportunities and policy
relevant options for conservation and sustainable development.
Amazon Assessment Report 2021, Copyright @ 2021, Science Panel for the Amazon.
This report is published under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-
NC-SA 4.0) License. ISBN: 9781734808001
Suggested Citation
Moraes R M, Correa SB, Doria CRC, Duponchelle F, Miranda G, Montoya M, Phillips OL, Salinas N, Silman M, Ulloa Ulloa
C, Zapata-Ríos G, Arieira J, ter Steege H. 2021. Chapter 4: Biodiversity and Ecological Functioning in the Amazon. In:
Nobre C, Encalada A, Anderson E, Roca Alcazar FH, Bustamante M, Mena C, Peña-Claros M, Poveda G, Rodriguez JP,
Saleska S, Trumbore S, Val AL, Villa Nova L, Abramovay R, Alencar A, Rodríguez Alzza C, Armenteras D, Artaxo P,
Athayde S, Barretto Filho HT, Barlow J, Berenguer E, Bortolotto F, Costa FA, Costa MH, Cuvi N, Fearnside PM, Ferreira
J, Flores BM, Frieri S, Gatti LV, Guayasamin JM, Hecht S, Hirota M, Hoorn C, Josse C, Lapola DM, Larrea C, Larrea-
Alcazar DM, Lehm Ardaya Z, Malhi Y, Marengo JA, Melack J, Moraes R M, Moutinho P, Murmis MR, Neves EG, Paez B,
Painter L, Ramos A, Rosero-Peña MC, Schmink M, Sist P, ter Steege H, Val P, van der Voort H, Varese M, Zapata-Ríos G
(Eds). Amazon Assessment Report 2021. United Nations Sustainable Development Solutions Network, New York, USA.
Available from https://www.theamazonwewant.org/spa-reports/. DOI: 10.55161/IKRT9380
Chapter 4: Biodiversity and Ecological Functioning in the Amazon
INDEX
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Science Panel for the Amazon
Chapter 4: Biodiversity and Ecological Functioning in the Amazon
Graphical Abstract
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Science Panel for the Amazon
Biodiversity and Ecological Functioning in the Amazon
Mónica Moraes R.*a, Sandra Bibiana Correab, Carolina Rodrigues da Costa Doriac, Fabrice Duponchelled, Guido Mirandae, Mariana
Montoyaf, Oliver L. Phillipsg, Norma Salinash, Miles Silmani, Carmen Ulloa Ulloaj, Galo Zapata-Ríosk, Julia Arieiral,m, Hans ter Steege*n
Key Messages
● Between the Andean mountains and the Amazon plain, a diverse mosaic of ecosystems and vegetation
is represented by forest, savanna, and swamp biomes. The key to understanding the ecology of the Am-
azon region is to integrate functional processes between terrestrial and aquatic components, across
multiple biophysical gradients, from the continental divide to the ocean.
● Amazonian lowland forests, covering 5.79 M km2, is likely the richest forest area globally, holding an
estimated 16,000 tree species and perhaps over 50,000 plant species, many of which are still unknown.
With close to 400 billion trees, the Amazon is home to 13% of all trees worldwide.
● Species composition is not evenly distributed across the basin but is determined by soil geology and
climate. The most diverse forests are found in the western Amazon; however, protected areas are re-
quired across the basin for comprehensive conservation. Forests in the western Amazon cover rela-
tively fertile soil, are species-rich, have high stem turnover, and have somewhat lower above-ground
biomass. Forests in the central and eastern Amazon, mainly found on poor soils, are less dynamic and
have high biomass.
● The Amazon River Basin holds the largest tropical wetland area on Earth, and a vast number of rivers,
comprising not only the world’s largest store of freshwater, but also 15% of all fish species.
● Forest composition is already being affected by climate change, with the mortality of wet-soil affiliated
genera having increased in places where the dry season has strengthened the most. Given climate
change projections for this century, such changes are likely to intensify.
● Amazonian ecosystems result from a mixture of terrestrial and aquatic landscapes in often extensive
floodplains, whose dynamics are affected by the tectonic uplift of the eastern Andean slopes and the
much less geologically active lowland Amazon River Basin. The contact areas, or ecotones, between ter-
restrial and aquatic ecosystems (fresh and marine waters) are of critical importance for the dynamics
of the whole region. They contribute to the movement of animals, plant propagules, and nutrients be-
tween the floodplain and adjacent terra firme forests, and promote habitat heterogeneity.
a Herbario Nacional de Bolivia, Instituto de Ecología, Universidad Mayor de San Andrés, Av. Andrés Bello y calle 27 - Zona Sur, La
Paz, Bolivia, [email protected]
b Department of Wildlife, Fisheries and Aquaculture, Mississippi State University, 775 Stone Blvd, Mississippi State, MS 39762, USA
c Universidade Federal de Rondônia, Av. Pres. Dutra, 2965 - Olaria, Porto Velho - RO, 76801-058, Brazil
g School of Geography, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, United Kingdom
h Pontificia Universidad Católica del Perú, Av. Universitaria 1801, San Miguel 15088, Peru
i Wake Forest University, Department of Biology, 1834 Wake Forest Road, Winston-Salem NC 27109, USA
j Missouri Botanical Garden, 4344 Shaw Blvd, St. Louis MO 63110, USA
k Wildlife Conservation Society, Avenida de los Granados N40-53 y París, Quito, Ecuador
l Universidade Federal do Espírito Santo, Instituto de Estudos Climáticos, Av. Fernando Ferrari, 514, Goiabeiras, Vitória, ES, Brazil.
m Instituto Nacional de Ciência e Tecnologia em Áreas Úmidas (INAU), Universidade Federal de Mato Grosso, R. Quarenta e Nove,
● Because of its size and the carbon density of its ecosystems, the Amazon forest is a huge carbon store.
Spatial variation in Amazonian biomass, carbon stocks, and biomass dynamics is driven more by soil
conditions than climate and more by spatial variation in tree mortality than productivity.
● Amazonian wetlands also store large amounts of carbon due to the extensive and deep accumulation of
below-ground peat deposits (e.g., >3 Pg C in north-western Amazonian swamps). Hence, their conser-
vation also plays a crucial role in modulating global warming.
Abstract
Amazonian lowland tropical rainforests cover ~5.79 million km2. Based on geology, the Amazon lowland
forest area can be divided into six regions. The Guiana Shield and Brazilian Shield (in the southern Ama-
zon) are on very old, nutrient-poor soils, while the Western Amazonian regions (northern and southern)
and the regions along the Amazon River are mainly built from more recent sediments of Andean origin
and of variable nutrient richness. The six regions are characterized by differences in soil fertility and rain-
fall, causing differences in above-ground biomass, productivity, and tree turnover. There is still intense
debate concerning the total plant species richness of the the Amazon. A well-supported estimate for trees
(diameter >10 cm) is 16,000 species, ~11,000 of which have been collected and described. Estimates of the
total flora range from 15,000 to 55,000 species. As in much of the tropics, Fabaceae (the bean family) are
the most species-rich of the major woody groups in the Amazon. South America and the Amazon are also
renowned for the abundance and diversity of palms. While most ecosystem vegetation models emphasize
climate and carbon production processes, these are not sufficient to understand how Amazonian forest
ecosystems vary spatially. In particular, long-term observations with plots show that spatial variation in
Amazonian forest biomass and stem dynamics are driven more by soil conditions than climate, while car-
bon stocks are constrained as much by soil physical features and tree floristic composition as by produc-
tivity. The key effects of soil on the Amazon’s ecosystem function also extend to animals and their im-
portant functions, including herbivory, seed dispersal, and insect activity. Soil and geology influence Am-
azonian rivers too, which are distinguished as being either white-water (carrying sediments from the An-
des), clear-water (draining the ancient Shields), or black-water (draining white sand areas). The nutrients
associated with each major river class strongly determine the floodplain forest ecology and species, with
igapó in sediment-poor clear and black-waters, and várzea (known as tahuampa in Peru) with white, sedi-
ment-rich waters. Climate impacts become stronger towards the margins, and some Amazon forests are
already close to the thermal and hydrological limits of sustaining productive forest ecosystems. Amazo-
nian tree mortality rates are already increasing in many intact forests, Amazonian forest composition has
been affected by recent droughts, and the mortality of wet-affiliated Amazonian tree genera has increased
in places where the dry season has intensified. Key areas of uncertainty include understanding the extent
to which recent climate change has caused a slowing of the carbon sink in intact Amazonian forests, and
whether intact forests will now lose carbon, or whether the shallow water tables and rich biodiversity of
many Amazonian forests will buffer against climate change, especially in the western part of the basin.
Keywords: Amazonian ecosystems, aquatic ecosystems, forest dynamics, ecological features, ecosystem processes, inter-
actions, river systems, terrestrial ecosystems.
4.1. Amazonian Ecosystems: An Introduction Brazilian Shields, covers about 8.4 million km2 of
northern South America (see Chapter 2). The
The Amazonian biogeographical region, includ- Amazon River basin (7.3 million km2), including
ing the lowland Amazon and Orinoco River Ba- the Tocantins and Araguaia Basins, covers 41%
sins and adjacent upland areas of the Guiana and of South America, encompassing two of the
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
major South America biomes, tropical moist for- the Andes, followed by a more detailed descrip-
ests and tropical savannas (Coe et al. 2008). The tion of the lowland Amazonian terrestrial vegeta-
Amazon region is considered one of the most im- tion types, and conclude with the vast wetlands
portant ecological regions in the world, because included in the area. We continue with an analy-
it includes the largest area of continuous tropical sis of the main ecosystem functions (e.g., terres-
moist forests, estimated to cover 5.79 million trial and aquatic), with an emphasis on produc-
km2 (Ter Steege et al. 2015) and an estimated tivity and carbon sequestration. The aim of this
>10% of all known species of vertebrates and vas- chapter is to reveal the enormous variation of
cular plants on Earth are estimated to live there vegetation types, their diversity and functioning,
(Chapter 2). It also contains by far the largest and how this is affected by soil, climate, and
tropical floodplain system (Keddy et al. 2009), flooding dynamics.
constituted by a rich mosaic of terrestrial,
aquatic, and transitional ecosystems subjected 4.1.1. Vegetation types from the High Andes to
to seasonal or permanent waterlogging (Salo et al. the Atlantic Ocean
1986) (Figure 4. 1).
Alexander von Humboldt’s Tableau Physique
The ability of ecosystems to capture, process, (Humboldt 1805) is, arguably, the first published
and store carbon and other nutrients is deter- overview of plant composition in northern South
mined by key climatic, edaphic, and biological America as a region (Figure 4.2). His travels ex-
factors. The Amazon, with the largest tropical tended from the Pacific to the Atlantic Oceans
rainforest on the planet, encompasses signifi- and passed Chimborazo, the highest equatorial
cant differences in precipitation regimes but volcano in Ecuador (Ulloa Ulloa and Jørgensen
even greater differences in the geological origin, 2018).
age, and nutrient richness of the soils that sup-
port its ecosystems (see Chapter 1). Here we re- Humboldt depicted the biotic and physical char-
view the role of these factors in controlling forest acteristics, and changes in vegetation structure
composition and processes, especially those re- and composition along an elevation gradient,
lated to productivity and forest dynamics. For ex- from the tree-dominated lowlands to the treeless
ample, Amazonian forest biological, structural, páramo bordering the snow line.
and functional diversity is fundamentally af-
fected by water and nutrients. Hydrology defines Plant communities in the high Andes (above
their higher-level classification as terra firme for- 3,000 m) are known as ‘páramo’ in the more hu-
ests, seasonally flooded forests (várzea, igapó), mid areas of the northern Andes of Venezuela,
and swamp forests. Freshwater ecosystems Colombia, and Ecuador, and ‘jalca’ in northern
cover more than 1 million km2, consisting of Peru (Madriñán et al. 2013); ‘puna’ is found in the
three main water types: white, black, and clear southern, drier Altiplano of Peru and Bolivia
waters, which differ in their origin and sediment (Sánchez-Vega and Dillon 2006).
composition. Within the extensive non-flooded
forests, distinctive and extremely poor white Páramos and punas are grass-dominated ecosys-
sand forests may be found, especially in the up- tems with plants uniquely adapted to these ex-
per Rio Negro area and the Guianas (see Adeney treme environments of cold temperatures, low
et al. 2016). pressure, and extreme solar radiation, with
prominent rosette forming plants, such as those
In this chapter we summarize information on in the genera Espeletia and Puya. Only a few spe-
Amazonian ecosystems and their ecological cies of trees, such as those in the genera Buddleja,
functions, with a primary focus on trees. We start Gynoxys, and Polylepis, reach the highest eleva-
with a short description of the vegetation types of tions, up to 4,700 m (Hoch and Körner 2005).
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
Figure 4.1 Map of Amazonian vegetation and ecosystems (Source: Comer et al. 2020). The solid gray box highlights the high richness
of vegetation and ecosystems found in the latitudinal and altitudinal gradients in the Amazon (see Figure 4.4 for detail).
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
Upper montane forests traverse humid sites submontane forests gradually change into Ama-
from 2,500 to 3,900 m elevation. Montane forests zonian lowland forests, defined here as those be-
are among the most species rich vegetation types low 500 m, which cover most of the basin. Over-
to be found in the tropical high Andes (Gentry all, the Andes mountains are extraordinarily di-
1988). These forests are 5 to 20 m tall with emer- verse due to their climatic and topographic com-
gent trees reaching 35 m or more, but with plexity, their size, and their position spanning
smaller individuals at the treeline, in places the Equator, northern, and southern tropical
where soils are shallow, or where disturbances zones. Including the forests of the eastern flanks
altered past vegetation. Lower-Montane forests of the Andes, which merge into the Amazonian
are found at middle elevations, between 1,000 lowlands, they have exceptional levels of diver-
and 2,500 m, and can be as diverse and complex sity and endemism, combined with ongoing
as forests found in humid tropical lowlands. In- rapid deforestation and land use changes (e.g.,
termontane valleys cut through the tropical An- Young et al. 2007).
des, reaching as low as 2,000 m. Andean and Am-
azonian species and ecosystems form spatial 4.2. Lowland Amazonian Ecosystems
mosaics in the alluvial valleys above 1,000 m,
surrounded by slopes covered by montane for- 4.2.1 Terrestrial Ecosystems
ests (Josse et al. 2009). Below 1,000 m, Andean
Figure 4.2 Alexander von Humboldt’s Tableau Physique (Humboldt 1805), a graphic overview of plant communities, from the Pacific
to the Atlantic Ocean and passing over the Andean mountains. Reproduced with permission from the Peter H. Raven Library at
the Missouri Botanical Garden (https://www.biodiversitylibrary.org/page/9869921).
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
Figure 4.3 Map of tree α-diversity of the Amazon (http://atdn.myspecies.info), based on an interpolation of Fisher’s α of 2,282 plots
of mostly 1-ha. Black dots: Fisher’s α of individual plots. Green background color: the interpolated values calculated for 565 Amazo-
nian 1-degree grid cells (~111 km). In gray the six regions of the Amazon as used in this chapter (Quesada et al. 2011, ter Steege et
al. 2013).
More generally, even with a large proportion of From mathematical models it can be estimated
its diversity still not described, the Amazon that over 10,000 species number less than 1 mil-
houses a remarkable share of currently docu- lion individuals, while over 5,000 number less
mented global biodiversity, holding at least 18% than 5,000 individuals. The Amazon thus com-
of vascular plant species, 14% of birds, 9% of bines hyper-diversity with hyper-dominance
mammals, and 8% of amphibians found in the and hyper-rarity.
Tropics. As one example of the level of mamma-
lian diversity, of the 18 New World primate gen- Ten families contribute 65% of all trees in the
era, 14 occur in Amazon, and eight are endemic Amazon; Fabaceae (47 billion), Arecaceae (26 bil-
to the region (da Silva et al. 2005). lion), and Lecythidaceae (20 billion) are the most
abundant. The ten most abundant species are
While the forests are exceptionally diverse, the Eschweilera coriacea (4.7 billion), Euterpe precatoria
tree communities at large scale are dominated by (3.9 billion), Oenocarpus bataua (2.8 billion), Pseu-
relatively few species, and several of these domi- dolmedia laevis (2.8 billion), Protium altissimum (2.8
nants are widespread. As a result, a little over 200 billion), Iriartea deltoidea (2.6 billion), Mauritia
tree species (out of the estimated 16,000) account flexuosa (1.9 billion), Socratea exorrhiza (1.9 bil-
for half of all trees over 10 cm dbh (ter Steege et lion), Astrocaryum murumuru (1.8 billion), and Pen-
al. 2013, ter Steege et al. 2020). taclethra macroloba (1.7 billion) (ter Steege et al.
2020). It is interesting to note that palms
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
(Arecaceae) are the second most abundant family nutrient poorness but more likely a consequence
and contribute seven of the ten most abundant of their small, fragmented area (ter Steege et al.
species, yet consist of very few species compared 2000, 2019a). Because of the stark soil differ-
to the most abundant family, Fabaceae. The lat- ences between white sand forests and terra firme
ter have 789 species in the plot data of ter Steege forests, white sand forests are characterized by
et al. (2020), while Arecaceae have only 74. In fact, high levels of endemism (Adeney et al. 2016).
Arecaceae are five times more likely to be among
the ~220 hyperdominants than would be ex- Tree genera typically found in white sand forests
pected on the basis of its species richness. Faba- include Eperua, Micrandra, Clathrotropis, Dicymbe,
ceae are also the family with the highest tree spe- Hevea, Aspidosperma, Protium, Licania, Pouteria,
cies richness in the Amazon with 1,386 collected Swartzia (ter Steege et al. 2013). Impoverished ar-
species (ter Steege et al. 2019b), For all seed eas (often due to burning) tend to have more
plants the majority of the species-rich families scrub-like vegetation (locally called campina,
are small statured or herbaceous, except Faba- bana, muri scrub), often dominated by Humiria
ceae (Cardoso et al. 2017). balsamifera, and in the Guianas by Dimorphandra
conjugata as well (Lindeman and Molenaar 1959).
Tree species diversity is not evenly distributed Because of their isolation in small patches, white
across the Amazon (Figure 4.3). The highest di- sand forests may never recover species that have
versity is found in the northwestern Amazon and been lost (Álvarez Alonso et al. 2013). White-sand
central Amazon where single plots of one hectare ecosystems in the central Amazon still remain
may have over 300 tree species (Amaral et al. inaccessible and poorly studied (Adeney et al.
2000, Gentry 1988). Much lower diversity is the 2016).
Brazilian and Guiana shields, especially towards
the edges of the Amazonian forest. 4.2.1.3. Savannas and grasslands
Species richness is highest in Dryland (terra Savanna vegetation is characterized by the pres-
firme) forests (Figure 4.4), especially those of the ence of up to 40% tree cover, often less than 8 m
more fertile western Amazon, and lowest in tall, with a graminoid layer. Savanna occupies
flooded forests (várzea, igapó), swamp forests, and 14% of the Amazon basin (including the Tocan-
white sands. Although fertility and flooding may tins-Araguaia basin) and is distributed in terra
affect species richness, tree diversity (and its in- firme in the southeast of the Brazilian Amazon,
verse – dominance) is also linked to the total area and in permanently or seasonally flooded sites,
a particular system makes up in the Amazon (ter as in Beni savanna in Bolivia, in patches of open
Steege et al. 2000, ter Steege et al. 2019a). savanna under washed white sand across the
Amazon, or on degraded lands subject to fire.
4.2.1.2 White sand forests White sand savannas are mainly found in the up-
per Rio Negro area and the Guianas (see above).
White sand forests (known by common names Savannas extend over sandy-clay substrates and
like campinarana, Amazonian caatinga, varillar) eventually form forest islands – around 0.3 to 1.5
are found on pockets of highly leached deposits km2 – mixed with swamps in depressions and
of podzolized white-sand (Adeney et al. 2016). gallery forests within the basin, which are part of
the drainage system of the whole landscape.
White sand forests occupy roughly 3-5% of the Woody savannas on terra firme or slighty higher-
Amazon, with major occurrence in the upper Rio relief terraces of the alluvial plain are formations
Negro area and the Guianas (Adeney et al. 2016). with species of Curatella americana, Anacardium
They are generally species poor, especially in the microcarpum, Hancornia speciosa, Qualea grandi-
Guianas, a feature often attributed to their flora, Byrsonima crassifolia, and Tabebuia spp., as
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
Figure 4.4 A. Key ecosystems are found in Amazonian lowland rainforests, such as floodplain forests, Amazon savanna, white-
sand savanna, and seasonally dry forest. B. The ten most encountered tree species on ~2,000 plots across the Amazon by forest
type (IG – igapó, PZ – white sand forest, SW – swamp forest, TF – terra firme forest, VA – várzea forest. Top lines: total species
encountered in plots in these forest systems and the percentage compared to the 5,058 species in all 2,000 plots (data: ter Steege
et al. 2015).
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
well as grasses such as Trachypogon, Paspalum, Cy- swamps, and sustains the greatest freshwater
peraceae, and others (Pires and Prance 1985). fish diversity on Earth; an ichthyofauna that is
equivalent to 15% of all freshwater species cur-
Among the animal species characteristic of the rently described (Junk et al. 2011, Tedesco et al.
savannas are the White-Tailed Deer (Odocoileus 2017). In the animal communities associated
virginianus), Greater rhea (Rhea americana), with aquatic ecosystems there are numerous fish
Southern screamer (Chauna torquata), Banded ar- species, and iconic species such as Capybara (Hy-
madillo (Dasypus novemcinctus), and maned wolf drochoerus hydrochaeris), Neotropical otter (Lutra
(Crysocyon brachyurus). longicaudis), Giant otter (Pteronura brasiliensis),
Amazon River Dolphins (Inia spp.), Yellow-Spot-
4.2.2. Fresh Water bodies and Wetlands ted River Turtle (Podocnemis unifilis), Matamata
(Chelus fimbriatus), Anaconda (Eunectes murinus),
Freshwater ecosystems in the lowland basin (el- Black Caiman (Melanosuchus niger), and other spe-
evations below 500 m) include rivers, lakes, and cies of crocodilians, among others.
streams, in addition to areas with permanent,
temporary, or seasonal standing or flowing wa- The Amazonian fluvial network is made up of dif-
ter, or with saturated soils, such as swamps, ferent types of waters (Figure 4.5). Amazonian
flooded forests, and marshes. These ecosystems rivers generally are classified into white-water,
are a fundamental part of the large fluvial system clear-water, and black-water, based on the color
of the Amazon and occupy >800,000 km2, or 14% of the water, which is related to transparency,
of the drainage area (Melack and Hess 2010; Hess acidity (pH), and electrical conductivity (Sioli
et al. 2015). Aquatic ecosystems in the Amazon 1984, Bogota-Gregory et al. 2020, Table 4.1).
are connected through the annual flood pulse, the These water characteristics also correlate to the
periodic fluctuation in water level that connects geological and geomorphological properties of
lowland rivers with their floodplains and allows the river catchments and their origins (McClain
the exchange of water, organic and inorganic ma- and Naiman 2008). The catchment properties di-
terials, and organisms (Junk and Wantzen 2003, rectly influence the composition and amount of
Junk et al. 2015; see 4.3.2 below). Depending suspended sediments in the water and, in turn,
upon classification criteria (e.g., scale, floristic the productivity of rivers and floodplain lakes (Si-
composition, geomorphology, the pattern of in- oli 1984). The fish communities in rivers and as-
undation, and water chemistry), aquatic ecosys- sociated floodplains also are influenced by water
tems and freshwater wetlands may vary from a characteristics. Conductivity and turbidity, in
few general types to more than 30 distinctive eco- particular, seem to be major drivers shaping Am-
systems (Comer et al. 2020). azonian fish communities (Bogota-Gregory et al.
2020).
4.2.2.1. Rivers, Lakes and Forest streams
White-water rivers (such as the Amazon main
The Amazon drainage basin is formed by the Am- stem, Caquetá-Japurá, Marañón, Ucayali, and
azon River and approximately 269 sub-basin Madeira) originate in the Andes, or, in the case of
tributaries with catchment areas between 300- the Jurua and Purus Rivers, in the hilly, rugged
1,000 km2 (Venticinque et al. 2016). The largest moderate elevations below 1,000 m in the Uca-
tributary systems that join the Amazon are the yali region in Peru. The Andean mountains sup-
Madeira, Negro, Japurá, Tapajos, Purus, and ply most of the terrestrial sediments, organic
other rivers that are among the 20 largest rivers matter, and mineral nutrients influencing the
on the planet. With more than 7,000,000 km2, the hydrology, geomorphology, biochemistry, ecol-
Amazon is the most extensive hydrographic net- ogy, and productivity of white-water rivers and
work in the world, bordered by riparian forests or their floodplains, all the way to the Amazon River
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
Figure 4.5 Amazon River Network across the largest tributary systems and the entire Amazon Basin (source: Venticinque et al.
2016), indicating the distribution of flooded environments (modified from Hess et al. 2015). Wetland areas cover ~14 % of the
basin (nor considering Tocantins-Araguaia drainage and estuarine coastal areas) (5.83×106 km2) and 16 % of the lowland basin
(5.06×106 km2) (Hess et al. 2015).
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
Table 4.1 Ranges of physico-chemical properties in blackwater, clearwater, and white-water for rivers and floodplain lakes across
the basin (gray text) (Source: Bogotá-Gregory et al. 2020). Conductivity (EC), dissolved organic carbon (DOC), dissolved oxygen (DO),
Inorganic (Inorg.), Herbaceous (Herb.). a Periodic phytoplankton (including cyanobacteria) blooms induce DO supersaturation (ca.
8–15 mg L− 1) and color clearwater green. b Precipitation of suspended silt due to reduced flow in white-water floodplain lakes sub-
stantially increases transparency relative to the parent white-water rivers. c High water hypoxia results from litter decomposition
in inundation forests; this effect is greater in large white-water floodplains. d Shallow white-water lakes reach extreme high low-
water temperatures.
pH High (6.5-7.5) (near neutral) Intermediate (EC 5.5-8.0) Low (3.5-6.0) (acidic)
Nutrient High (EC 40-300 µS cm-1) Low (EC 5-40 µS cm-1) Low (EC 5-20 µS cm-1)
Transparency Low (0.1-0.6 [usually < 0.3] m) High (1-3 m) High (0.6-4 m)
DOa High (2-8 mg L-1) High (2-8 mg L-1) High (2-8 mg L-1)
estuary, associated mangroves, and the ocean near-neutral pH, and the relatively high concen-
(McClain and Naiman 2008; Filizola and Guyot tration of dissolved solids is reflected in the elec-
2009; Encalada et al. 2019). Andean-derived large tric conductivity, which varies between 40–300
sediment loads control downstream channel ero- μS/cm (McClain and Naiman 2008, Bogota-Greg-
sion and width, bed elevations, and the availabil- ory et al. 2020). White-water rivers are sur-
ity of riparian habitats and vegetation. These, in rounded by diverse várzea floodplain forests and
turn, influence the connectivity between river extensive floating meadow wetlands (Wittmann
channels and floodplains, and therefore spatial et al. 2011, see 4.2.2.2. below).
patterns of inundation and floodplain productiv-
ity (Constantine et al. 2014; Forsberg et al. 2017). Clear-water rivers (such as the Tapajós and
White-water rivers are turbid, with water trans- Xingu Rivers) have their upper catchments in the
parency ranging between 20 and 60 cm, because cerrado region of central Brazil and drain the an-
the high sediment loads contain suspended clay cient Brazilian shield, which has been strongly
particles from drained soil and completely de- eroded over millennia (Sioli 1984). The pH of
graded plant material. White-water rivers have clear-water rivers varies from acidic to neutral,
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
depending on the soil, and the water hardly car- besse 2012). Depending on fluvial processes, two
ries any suspended and dissolved solids (Sioli other groups are recognized: 1) lagoons formed
1984). The transparency of their greenish waters by the lateral displacement of the channel, in
is high (100–300 cm), electrical conductivity stretches of abandoned channels and meanders
ranges between 5–40 μS cm, and pH varies be- (lagoons or swamps depending on the degree of
tween 5.5–8 in large rivers (Bogota-Gregory et al. sedimentation), and lagoons that join islands to
2020). the floodplain; and 2) lakes generated by geo-
graphical features such as those built by vertical
Black-water rivers have their origin in lowlands, accretion processes in the main channel and by
are translucent, high in dissolved organic car- floods in the alluvial plain (e.g., square lagoons
bon, and low in nutrients. Rivers such as the Ne- also influenced by tectonics in SW Amazon), or
gro in Brazil and Vaupés and Apaporis in Colom- by deltas of alluvial plains, with dikes and
bia drain the Precambrian Guayana shield, char- blocked valleys (e.g., ria lakes).
acterized by large areas of white sands (podzols).
Water transparency ranges between 60–400 cm, In meandering rivers such as those found in the
with low quantities of suspended matter but high Amazon Basin, sediment deposits rich in clay
amounts of humic acids (rich in dissolved or- form within floodplains. These clay deposits slow
ganic carbon (DOC) from the incomplete degra- water flow and thus help to decrease the migra-
dation of forest plant material), which give the tion rates of the channel – up and down streams
water a brownish-reddish color. The pH values – affecting bank erodibility on a large scale (10–
are in the range of 3.5–6 and electrical conduc- 50 km) and sinuosity by 30% (Schwendel et al.
tivity varies between 5–20 μS/cm (Bogota-Greg- 2015). The grain size of clay-rich sediment de-
ory et al. 2020). Clear and black-water rivers are posits is similar to that of deposits near the outlet
surrounded by another type of flooded forest, of a meandering lake (1.5–3.0 μm) and form clay
igapó (See 4.2.2.2. below for a detailed descrip- plugs (Gautier et al. 2010). The abandoned mean-
tion of Amazonian floodplain wetlands). ders of rivers are known as oxbow lakes that may
or may not recover the sinuosity of the river.
Nevertheless, many rivers and streams do not However, while stagnant waters remain, aquatic
easily fit into these three categories and are con- submerged plant communities rapidly colonize
sidered as “mixed waters”. Greater variability in floodplain lakes, including species such as Victo-
water biochemistry results from the influence of ria amazonica, Lemna spp., Nymphaea gardneriana,
lower-order tributaries with different biogeo- and Eichhornia spp., among others. Oxbow lakes
chemical water properties that vary seasonally of black-water rivers are typically free of aquatic
depending on flooding levels and connectivity. plant communities due to their low nutrient lev-
els.
Amazonian lakes are the result of fluvial pro-
cesses in depressions or flooded valleys. Four Few areas within the lowland Amazon are more
main categories are distinguished: 1) lagoons in than 100 m above the river, where water comes
ancient lands not directly related to river sys- to the surface in the form of a dense network of
tems (e.g., the Hill of Six Lakes in the northern small streams. Most stream fauna depends on
Amazon), 2) lakes in river valleys and quaternary energy inputs from the surrounding forest (e.g,
sediments (not related to geographical features: insects and plant material) and much of the ter-
e.g., Pará and Rondonia states), 3) lakes gener- restrial flora and fauna also depend on resources
ated by river processes (e.g., the Boa Vista For- from streams. Intricate connections between
mation in the northern Amazon), and 4) "lakes" aquatic and terrestrial ecosystems continue as
of wetlands (a mosaic of lakes with a large diver- the streams coalesce to form larger rivers. In
sity in origin, shape, and functioning) (Latru- general, small streams are considered part of the
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
terra firme forest ecosystem and harbor great km2, 10%), and subjected to predictable, long-
aquatic biodiversity (Arbelaez et al. 2008). How- lasting, annual flood pulses (Junk et al. 2011; also
ever, as they form larger rivers, the forest canopy see 4.3.2. below). These forests are flooded due to
is no longer continuous, instead, the floodplain their low topographic location and poorly
areas around rivers support extensive forests drained soils. Flooding may last up to six months
(see 4.2.2.2. below), and the terrestrial and and water levels may fluctuate up to 10 m be-
aquatic ecosystems become more distinct (see tween the dry and flood seasons (Schöngart and
3.2. below). Junk 2007). The timing, duration, and magnitude
is variable across the basin. Such temporal and
4.2.2.2. Freshwater Wetlands spatial variation is mostly driven by air circula-
tion patterns and headwater precipitation modu-
There are several definitions of wetlands, but a lated by the Intertropical Convergence Zone and
broad and simple definition is proposed by Junk topography (Siddiqui et al. 2021). Although these
et al. (2011, 2014), which states that “wetlands are forests are flooded annually, different floristic
ecosystems at the interface between aquatic and zones are distinguished, which are influenced by
terrestrial environments with biota adapted for the input of sediments and nutrients in river wa-
life in water or in water-saturated soils.” Recent ters, flood regimes, and hydro-geomorphic dy-
large-scale mapping efforts have identified nu- namics (Prance 1979, Wittmann 2010).
merous wetlands dominated by vegetation, in
different sub-basins of the entire Amazon Basin. Floodplain forests along white-water rivers are
If we consider small riparian wetlands and wa- known as várzea in Brazil (or rebalse in Colombia)
terlogged savannas and grasslands, the esti- and represent the most extensive type of flooded
mated area covered by wetlands extends to 2.3 forest in South America, covering approximately
million km2 or 30% of the basin (Junk et al. 2011). 0.46 million km2 of the Amazon Basin (Junk and
Wetlands are divided into two main groups: 1) Wittmann, 2017). Amazonian white-water river
those with relatively stable water levels (e.g., floodplain forests contain around 1,000 species
Mauritia flexuosa palm swamps), and 2) those with of trees, making them the most diverse flood-
oscillating water levels (e.g., floodplain forests, plain forests in the world (Ferreira and Prance
mangroves). Some of these wetlands are forest- 1998; Wittmann et al. 2002, 2006). A significant
dominated and broadly distributed. In contrast, number of tree species are almost entirely re-
others are emblematic as they represent specific stricted to the floodplain (~40% of the most com-
regions within the basin, such as savanna eco- mon central Amazonian várzea tree species),
systems in the Llanos de Moxos, located in the while only ~31% of tree species in várzea are
Madeira basin of Bolivia; Bananal savannas of shared with terra firme forest (Wittmann et al.
Brazil which are seasonally inundated grass- 2011). Due to the seasonal influx of nutrients car-
lands, sedgelands, and open woodlands among ried by white-water rivers, floodplain forests are
many others (Castello et al. 2012, Figure 4.1). In eutrophic and highly productive (Junk and Pie-
the Upper Negro river basin, the Amazonas Sa- dade 1993), but their flora and fauna diversity is
vannahs Refuge and parts of the Imeri Refuge are less than that of terra firme forest (Patton et al.
considered centers of endemism for floodplain 2000; Haugaasen and Peres 2005a, b). This is be-
tree species, such as Mauritia carana, Ocotea es- cause of the selective pressure imposed by pro-
meraldana, and Vitex calothyrsa (Junk et al. 2010). longed annual floods. Due to its high productiv-
All of these wetlands are vital to support local ity, várzeas have been important centers of hu-
communities' livelihoods. man colonization which have intensified in the
last thirty years (Piedade et al. 2010). Data on the
Floodplain Forest Seasonally flooded forests are productivity of Amazonian aquatic ecosystems
second in area to terra firme forests (0.76 million are relatively few, but those available show that
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
remarkably high values are locally possible. This 2010; Junk et al. 2011). Due to the lack of soil nu-
is likely due to the combination of abundant nu- trients, tree abundance and biomass in igapó for-
trient and water supply, insolation, and macro- ests is much lower than in várzea and terra firme
phytes adapted to rapidly occupy the water-at- forests (Ferreira 1997, Junk et al. 2015, Wittman
mosphere interface when conditions permit (Ta- and Junk 2017). Montero et al. (2014) recorded
ble 4.2). The floodplain forests of Brazil, Peru, 6,126 trees with 243 species, 136 genera, and 48
and Ecuador are characterized by the presence families in 10 hectares along the middle Rio Ne-
of families such as Fabaceae, Moraceae, Are ca- gro. Most species found in igapó also occur in
ceae, Lecythidaceae and Annonaceae (Nebel et al. other ecosystems, such as terra firme and várzea
2001) and the flooded period may vary from 1 or forests, savanna, swamps, or white-sand forests
2 months to 6 months. In varzeas of the central (Junk et al. 2015). Among herbs, 55 species have
Amazon, characteristic tree species include Ceiba been documented, belonging to 20 families
pentandra, Hura crepitans, Nectandra amazonum, (Lopes et al. 2008); most of the species were found
and Cecropia spp. (Worbes 1997). These species with an exclusively terrestrial habit in the igapó
represent the early sequence forest species, have and belong to two main families: Cyperaceae
low wood density, and make up the successional (45% of the total) and Poaceae (7.3%) (Piedade et
process which is governed by hydrological sea- al. 2010).
sonality. Tree density (at 10 cm dbh) in várzea
varies along successional stages and flood-gradi- In general, comparison between terra firme,
ent position (i.e., high and low varzeas), being in várzea and igapó forests shows differences in tree
average 400–500 individuals ha−1 and with high- richness (Figure 4.4) and structural trends in the
est values occurring in early-secondary stages number of individuals. In general, terra firme for-
(800–1,000 individuals ha−1) (Wittmann et al. est shows greater density and richness of large
2011). trees (diameter at breast height ≥ 10 cm), fol-
lowed by várzea and igapó forests.
There are also floodplain forests along black-wa-
ter rivers (Junk et al. 2011), called igapó in Brazil. Permanently Flooded Swamps Permanently flooded
The igapó forests are seasonally flooded by black or waterlogged areas (swamps) occupy a small
(or clear) water rivers, for up to 9 m in depth, and area compared to other ecosystems in the Ama-
cover around 302,000 km2 (Melack and Hess, zon (80,000 km2, 1%). The extensive palm
Table 4.2 Net primary production (NPP, dry weight) for the most important populations and communities of aquatic herbaceous
plants in central Amazon várzea. NPP was measured under different methods and assumed to have a monthly loss between 10 and
25% of the biomass (Source: Piedade et al. 2010).
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
formations of Mauritia flexuosa, Oenocarpus ba- flooded regions. Such ecosystem shifts favor
taua, and Euterpe oleracea (Arecaceae) are very grasslands and deteriorated aquatic communi-
characteristic of swamps of the Amazon. Their ties, as was demonstrated in the Pantanal which
distribution is azonal as they are found from the is considered a hyper-seasonal savanna (Nunes
lowland plain to the Andean foothills, up to 500 da Cunha and Junk 2004).
m of altitude, always associated with highly stag-
nant black-waters (Moraes R et al. 2020), such as Mangroves Mangroves occupy relatively small ar-
in permanent wet depressions within the sa- eas in a narrow littoral belt towards the Atlantic
vanna landscape (Mauritia flexuosa) (Junk et al. Ocean and in the Amazon estuary. Mangroves are
2010). There are also permanent swamp areas subject to flooding by salt water or brackish wa-
with rooted plants in channels or depressions ter and have only a few tree species, generally
within the alluvial plain, characterized by herba- uniform in structure, not exceeding 10 m in
ceous species including Cyperus giganteum, Thalia height. The dominant mangrove species (in or-
geniculata, Pontederia spp., Eichornia spp., among der of abundance) are Rhizophora mangle (com-
others (Pires and Prance 1985; Beck and Moraes mon names are mangue verdadeiro in Brazil, red
R 1997). mangrove elsewhere), Avicennia nitida, and La-
guncularia racemosa (Pires and Prance 1985, Junk
Flooded Savanna The seasonally flooded savannas et al 2010). Brazilian mangroves occur mostly
of the alluvial plain cover an area of ca. 200,000 along the coasts of Amapá, Pará, and Maranhão
km2 (Pires and Prance 1985) and represent 6% of states and cover an area of about 14,000 km2 (IC-
flooded plant communities (Meirelles 2006). MBio 2018). The largest mangrove area extends
They occur in the northern (Roraima and Ru- southward from Belém and measures at least
pununi) and southern (Beni savanna) Amazon, 7,000 km2 (FAO 2007; Menezes et al. 2008). Little
along the cerrado belts in Brazil and the Guianas, is known about the wetlands along the coastline
and have strong climatic seasonality (several dry north of Belém. For Guyana, Huber et al. (1995)
moths) (Junk et al. 2011). estimated that there are about 900 km2 of coastal
mangroves. In areas with very strong freshwater
Flooding is mainly influenced by rainfall and the influence near the Atlantic coast, várzea forests
overflow of rivers during 3-5 months of the year, may replace mangroves.
but in a matter of hours, the flooding percolates
and the landscape returns to its natural state 4.3. Ecosystem Functioning
without permanent water, except in lower places
and in depressions linked to rivers. On alluvial 4.3.1. Primary productivity, nutrients, forest
plains of white-water rivers, Poaceae species dynamics and decomposition
predominate (32% of the total), followed by Cy-
peraceae (20%) (Junk and Piedade 1993), and 4.3.1.1. Terrestrial ecosystems
their contribution to net primary production
(NPP) make them the most important aquatic In the Amazon, climatic factors exert the greatest
herbaceous plant community (Piedade et al. influence on gross production (GPP) in terrestrial
2010). ecosystems, but a wide range of other factors re-
lated to soil, forest disturbance, and species com-
Flooded savannas and grasslands are very fragile position are also influential in determining how
ecosystems. Savannization processes are being captured carbon is allocated and how long it is
generated by the reduction of floodplain forests stored in tree woody biomass and other ecosys-
due to various dynamics, such as deforestation tem compartments. Thus, bottom-up studies of
and fires driven by severe droughts in minimally the carbon budget and its seasonal variation us-
ing intensive measurements in plots of the GEM
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
(Global Ecosystems Monitoring) network (Malhi the productivity of the forest (e.g., Sobral et al.
et al. 2021) show variation in GPP between sites 2017), and it is possible that the pre-Colombian
from around 33 to 38 Mg C ha-1 yr-1 for more hu- extinction of Amazonian megafauna has im-
mid forests (in the west and north) to lower val- pacted productivity negatively by slowing the nu-
ues of 25 to 30 Mg C ha-1 yr-1 in drier forests of the trient transfer from richer floodplains to hinter-
Brazilian Shield and central Amazon (Malhi et al land terra firme forests, a function which the orig-
2015). However, carbon-use efficiency (CUE), de- inal large herbivores would have performed
fined as the fraction of fixed carbon that is used (Doughty et al. 2016).
to produce plant matter, i.e. NPP divided by GPP,
appears to be lower (0.3 – 0.4) in wetter sites than What does all this mean for forest dynamics, bio-
in more seasonal sites (0.4 – 0.5). Overall, the de- mass, and carbon storage? Inventory plots show
cline in GPP in the drier sites is compensated by that differences in above-ground biomass track
shifts in CUE and in allocation, so that in these more closely to underlying edaphic factors than
studies there is often no clear decline in tree to climate factors.
woody growth toward more seasonal parts of the
Amazon. Compensatory shifts in CUE and alloca- Mortality rates vary greatly across the Amazon,
tion unrelated to climate thereby may effectively being higher in the western and southern re-
decouple spatial variation in GPP, NPP, and gions, around 2.2-2.8% per year, than in the
woody growth. northern and eastern central regions where 1.1 -
1.5% is typical (Phillips et al. 2004, Marimon et al.
Less intensive but more extensive measure- 2014, Esquivel et al. 2020). Fast turnover forests
ments of woody growth and tree mortality (Box often correspond to where soils are relatively
4.1), combined with species composition and soil rich chemically but offer poor structural support
measurements, help confirm the role of non-cli- physically. Associated with these high rates of
matic factors in affecting how carbon is allocated stand-level tree mortality is the prevalence of
in Amazonian ecosystems. In the widespread species with ‘live-fast-die-young’ life-history
RAINFOR forest inventories, above-ground strategies that tend to favor growth over survi-
woody production is more closely linked to vorship, with lower wood density storing less car-
edaphic factors, such as phosphorus concentra- bon (Baker et al. 2004, ter Steege et al. 2006,
tions, than to climate (e.g., Quesada et al. 2012). Honorio Coronado et al. 2009, Patiño et al. 2009).
Other non-climate factors play a role too. Thus,
the high tree mortality rates of some Amazonian Remarkably, basal-area weighted wood density
forests as a result of wind-disturbance (e.g., Es- in the slow-turnover forests of the northeast Am-
quivel Muelbert et al. 2020), while the poor phys- azon is up to 50% greater than in fast-turnover
ical structure and shallow rooting depths of forests in the south and west (Phillips et al. 2019).
many western Amazonian soils (Quesada et al. In sum, three decades of careful observation in
2012), ensure that more forest here is naturally permanent plots shows that spatial variation in
in early to intermediate successional states. Amazonian biomass carbon stocks and dynam-
These tend to produce wood faster and may have ics are driven more by soil conditions than cli-
greater carbon use efficiencies (Rödig et al. 2018). mate, and more by spatial variation in mortality
Additionally, the nature of the species present than productivity. These findings run counter to
makes a difference too; where tree phylogenetic the dominant paradigm in ecosystem vegetation
diversity is greatest, forests have greater levels of models which has emphasized the role of climate
woody productivity, even accounting for and processes of carbon production (GPP, NPP,
covarying climate and edaphic factors (de Souza tree growth), rather than its turnover and loss (es-
et al. 2019). There is also evidence that animals pecially mortality), and which often ignore the
may increase nutrient cycling and subsequently physical constraints and floristic compositional
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
BOX 4.1 How much does the longevity of Amazonian species vary?
Tree age has generally been inferred based on trunk diameter growth rates (growth rings) (Figure
B4.1A)., mortality (Condit et al. 1995, Shöngart et al. 2015), or radiocarbon dating (14C) (Chambers 1989,
Vieira et al. 2005). The maximum longevity values based on demographic studies were inferred in 93
species of canopy trees in the rain forest in the Central Amazon, considering the influence of the life
cycle, such as wood density, growth form, mortality rate, rate of recruitment, trunk diameter, increase
in growth, and population density. Maximum longevity ranged from 48 years for the pioneer tree
Pourouma bicolor (Cecropiaceae) to 981 years for the canopy tree Pouteria manaosensis (Sapotaceae), with
an overall average of 336 + 196 years (Laurance et al. 2004). These estimates of tree maximum age
coincided with the analyses of the average mortality rates; the longevity of the tree was positively cor-
related with the density of the wood, the maximum diameter of the stem, and the population density,
while it was negatively related to annual mortality, recruitment, and growth rates; pioneer species had
much shorter longevity than climax trees (Laurance et al. 2004).
Tree age data provide important information for conservation and sustainable forest management.
Emergent old-age trees in the central Amazon, for instance, represent a key component of the forest’s
carbon budget, as around 50% of the aboveground biomass is retained in less than the 10% of the larg-
est trees (Chambers et al. 1989). The time required for a tree to achieve a certain diameter varies with
Figure B4.1 (A) Stem disk, and Tree rings of Bertholletia excelsa Bonpl. (Lecythidaceae) from a plantation tree in Manaus. Tree
rings are defined by an alternating pattern of fiber (dark tissue) and parenchyma (light tissue) (Shongart et al. 2015, ©Wiley). (B)
Bertholletia excelsa achieves 50 meters’ height tree in terra firme forests and 400 years of age (© WWF-Brazil / Clóvis Miranda).
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
radial growth rates, with the cambial activity being influenced by abiotic site conditions and precipita-
tion that limits water in the dry season (Worbes 1999). Bertholletia excelsa (Lecythidaceae), a tree of 50
m height, may have 400 years and a diameter of 150 cm (Figure B4.1). As growth is higher under favor-
able light conditions (e.g., under canopy gaps), a tree of 10 cm diameter can have an age varying from
13 to 50 years (Shöngart et al. 2015). The flood-tolerant tree Calophyllum brasiliense (Calophyllaceae) may
achieve a maximum age of 490 years in a black-water floodplain. Under permanently waterlogged con-
ditions the longevity is reduced to 72 and 134 years. As consequence, for achieving the 50 cm diameter-
cutting limit based on forest management norms in the Brazilian Amazon, C. brasiliense would spend 70
years in white-river floodplains, but a remarkable 400 years in black-water floodplains (Rosa et al.
2017), suggesting habitat-specific Growth-Oriented Logging is needed to ensure species conservation
(Schöngart 2008).
The relation between radial growth rates and precipitation in the Amazon floodplain allows an esti-
mate of the effect of climate variability induced by the El Niño phenomenon with forest dynamics. Low
precipitation events influenced by El Niño (see Chapter 22) are related to increased growth periods in
the long-living (143 to 289 years old) hardwood species Piranhea trifoliata Baill. (Picrodendraceae). Un-
like in terra firme forests, the influence of drought on growth rates in floodplain trees may increase
carbon absorption, partially compensating the carbon emitted from terra firme forests under El Niño
periods (Shongart et al. 2004). Efforts to determine the age and growth rate of tropical trees under
flooded and non-flooded conditions, and the influence of climate and soil conditions on growing pat-
terns, are essential to guide wise use and long-term preservation (Vetter and Botosso 1989, Shöngart
et al. 2008).
factors which largely determine Amazonian for- et al. (2016) found that Neotropical primate abun-
est biomass. dance and diversity are largely controlled by fruit
production, and with much greater biomass and
The key effects of soils on Amazonian ecosystem diversity in the western Amazon than in the Gui-
function extend also to animals and their im- ana and Brazilian Shields. Such effects are likely
portant functions, including herbivory and seed to extend to many other animal groups, as we
dispersal. Travelers from the west to the east of have known for more than a third-of-a-century
the Amazon are often struck by the remarkably that production of flowers and fruits in the neo-
low level of insect activity, which can make field- tropics is closely tied to soil nutrient status (Gen-
work much more comfortable. This likely reflects try and Emmons 1987).
fundamental controls of cations and other nutri-
ents on the metabolism of animal consumers Finally, we note that climate nevertheless does
(e.g., Kaspari et al. 2009) as well as plant produc- impact rates of woody production, and clearly
ers (e.g., Lloyd et al. 2015). In the white sand for- has consequences for forest carbon storage and
ests of the Amazon, the interaction of impover- biodiversity. Both worldwide and in the Amazon,
ished soils and herbivory can select for invest- woody production is suppressed in the most ex-
ment in defense by the plants, while in forest for- treme seasonal tropical forest climates with high
mations with clay soils species are instead fa- maximum temperatures and high seasonal water
vored that commit resources to rapid growth deficits (Sullivan et al. 2020). This means that
(Fine et al. 2006). Large animals too respond to some Amazonian forests are already at the cli-
bottom-up soil controls; for example, Stevenson matic limits capable of sustaining productive
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
forest ecosystems. As a consequence, in some of and hence on forest plant and faunal community
the tropical forests which have warmed and dynamics. In elevation gradients at the Andes-
dried most, the long-term carbon sink of a ma- Amazon interface in Peru, temperature is the
ture forest appears to have recently weakened variable that best explains variations in litter de-
(Hubau et al. 2020). In the Amazon we also know composition rates (Salinas et al. 2011). Pinto et al.
from long-term RAINFOR plots that forest com- 2018 indicate that, as an effect of global change,
position is being affected by recent droughts, increases in temperature and dry season dura-
with the mortality of wet-affiliated genera in- tion are anticipated for the southern Amazon Ba-
creasing in places where the dry season has in- sin and the Pantanal (Gatti, et al. 2014; Junk
tensified most (Esquivel Muelbert et al. 2019). 2013), so these are likely to induce changes in de-
However, not all Amazonian forests appear to be composition rates and patterns. Also, the physio-
so impacted, with large areas with shallow water logical, morphological, and biochemical charac-
tables in the central and western Amazon poten- teristics of Amazonian tree species (their func-
tially effectively immunized against drought via tional traits) play an important role in their de-
local water supplies, in some cases even seeing composition. Species type has a large influence
an increase in growth and carbon stocks during on the decomposition rate (k) (Hättenschwiler et
recent drought (Sousa et al. 2020). Key areas of al. 2011), most probably through its influence on
scientific uncertainty include the extent to which wood density and leaf quality and morphology.
recent climate change has actually caused the For example, the influence of leaf anatomy is
slowdown in the intact Amazonian biomass car- manifested primarily through spongy paren-
bon sink (Brienen et al. 2015), and whether it chyma thickness, which strongly influences the
might soon go into reverse, with the remaining moisture-holding capacity of the leaf material,
intact Amazonian forests becoming a net carbon which in turn largely explains the observed mois-
source under further warming, as some have ture content in the leaves.
predicted (e.g., Hubau et al. 2020, Sullivan et al.
2020). Alternatively, forests may prove more cli- 4.3.1.2. Freshwater ecosystems
mate-change resistant than expected, especially
if the shallow water tables, wetter climates, and As with terrestrial ecosystems, the functions of
rich biodiversity of many Amazonian forests, in aquatic ecosystems comprise biochemical activ-
the west especially, help prevent large regions of ities of productivity (plants and algae), decompo-
the Amazon from becoming a net carbon source. sition of dead organic matter, and processes re-
Critical, of course, to the fate of the intact forest lated to the flow of energy and nutrient recycling
sink will be whether the forests themselves sur- (Morris 2010). These functions affect and are af-
vive. A recent analysis shows that for parts of the fected by interactions between living organisms
eastern Amazon carbon losses from deforesta- and consecutively sustain biodiversity and hu-
tion and degradation already exceed the sink in man well-being. However, unlike terrestrial eco-
remaining forest lands (Gatti et al. 2021). systems, the flow of water makes aquatic ecosys-
tems highly dynamic in both space and time.
To complete our picture of forest dynamics, we This is due to changing physical conditions and
need to understand the decomposition of dead biotic components along stream and river chan-
organic material as a fundamental biogeochemi- nels, from the headwaters to downstream conflu-
cal process, both through its role in the forest ence with other rivers or the sea, and the influ-
carbon (C) cycle and, perhaps more importantly, ence of precipitation on streamflow.
through its role in the recycling of nutrients to
soil and plant communities. Any changes in de- The flow of energy and nutrient recycling are
composition processes will have profound im- prime examples of the dynamic nature of aquatic
pacts on the rate and pattern of nutrient cycling, ecosystems, and the Amazon is no exception.
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Chapter 4: Biodiversity and Ecological Functioning in the Amazon
Headwater and forest streams are shaded by veg- forests represent the most carbon-dense ecosys-
etation, inhibiting algae growth, a key energy tem (1,391 ± 710 Mg C ha−1) in the Amazon
producer in aquatic ecosystems. Instead, ripar- (Draper et al. 2014). Our knowledge here is in-
ian vegetation subsidizes aquatic food webs that complete, and peat may extend up to nine meters
are dominated by shredder invertebrates and de- deep (Householder et al. 2012). Recent intensive
composer bacteria that help recycle nutrients fieldwork revealed 61% more area of peatland
(Vannote et al. 1980). Nutrients travel down- pole forest in north Peru than initially thought
stream in a spiral-like pattern and, as the width (Coronado et al. 2021, Honorio et al. 2021). Be-
of the river channel expands downstream, algae cause peatland ecosystems function as carbon
growth is no longer limited by shading (Vannote sinks, they play a crucial role in maintaining the
et al. 1980). The lack of dissolved nutrients limits natural balance of the carbon cycle, modulating
algae production in nutrient-poor rivers such as global warming. Recent models estimate that
Amazonian clear-water and black-water rivers, 38% of Amazonian wetlands form peat deposits;
while acidity and low light penetration in dark- however, the lack of climate data needed to build
stained water further limits productivity in hydrological models hinders quantification of
black-water rivers. In turbid white-water rivers, the true extent of peatland ecosystems within the
light penetration also is a limiting factor to algae Amazon basin, and thus the importance of the re-
growth (Moreira-Turcq et al. 2003; Dustan 2009). gion in the global greenhouse gas budgets (Gum-
By connecting rivers with floodplain habitats, the bricht et al. 2017).
flood pulse provides a mechanism to compensate
for limited in-situ algal productivity by replen- 4.3.2. The Flood Pulse and Aquatic-Terrestrial
ishing nutrients during the annual flood (Junk Transition Zone
and Wantzen 2003, see 4.3.2 below).
Variation in water flow and depth is driven by re-
Some wetlands contribute to carbon storage at a gional and local precipitation patterns, which,
global scale due to the extensive and deep accu- coupled with variations in stream order, latitude,
mulation of below-ground peat deposits. Peat is a and elevation across the enormous Amazon Ba-
type of soil with a top layer composed of at least sin, create distinctive flow regimes (Goulding et
50% decomposed or semi-decomposed organic al. 2003, Siddiqui et al. 2021). In a recent classifi-
material (i.e., 29% carbon content), extending at cation, Siddiqui and collaborators (2021) identi-
least 30 cm deep (Gumbricht et al. 2017). Several fied 6-7 flow regimes based on a combination of
factors are essential in determining the location hydrological characteristics that include the tim-
of peatland ecosystems, including high rainfall, ing of the wet season, the magnitude of change in
frequent flooding, low drought and fire fre- streamflow, and the number of times streamflow
quency, and a low-lying topography that creates changes from rising to falling within a year. The
waterlogging and anoxic conditions for peat ac- timing of maximum flow, for instance, changes
cumulation (Draper et al. 2014). Peatland ecosys- spatially across the Amazon basin, with maxi-
tems also are influenced by different types of wa- mum flooding occurring in February-March in
ters, with a gradient of nutrient content. They can the southern tributaries and June-July in the
be nutrient-poor ombrotrophic bogs if they are northern tributaries. The magnitude of change in
dominated by atmospheric water, or they can be streamflow increases in lower elevation areas,
nutrient-rich swamps that are influenced by riv- while at the same time, the frequency is reduced
ers (Lähteenoja and Page 2011). For example, in to a single large flood episode. Rainfall in the
the Pastaza-Marañon foreland basin located in headwaters of large Andean rivers causes a flood
the western Amazon in Peru, an area of 35,600 ± pulse that travels downstream and leads to a pre-
2,133 km2 contains 3.14 (0.44–8.15) Pg C below dictable annual hydrological cycle with distinct
palm swamps. At the same time, peatland pole water-level periods (rising, flood, falling, and dry)
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Science Panel for the Amazon
Chapter 4: Biodiversity and Ecological Functioning in the Amazon
and long-lasting flooding (4-15 m in depth and performing annual lateral migrations into the
weeks to months in duration) in floodplains of white-water floodplain habitats that largely con-
lowland rivers (≤ 500 m). This flood pulse drives tribute to their productivity (Junk et al. 1984; Bay-
multiple physical, biological, and ecological pro- ley and Petrere 1989; Bayley 1995; Goulding et al.
cesses in the Amazon Basin, from sediment 1996, 2019; Isaac et al. 2016). In floodplain lakes
transport to fish migration. In addition, the flood connected to white-water rivers, the lack of cur-
pulse drastically transforms the landscape of low- rents allows sediment settling and greater water
land rivers by creating an aquatic-terrestrial transparency, facilitating phytoplankton growth
transition zone (ATTZ) that allows the movement and fueling a zooplankton-based food web. Thus,
of nutrients and organisms between river chan- floodplain lakes play a key role as nurseries and
nels and floodplain habitats (Junk and Wantzen feeding grounds to juvenile fish of commercial
2003). value (Oliveira 2006). The current consensus
among researchers is that a mixture of carbon
Interactions between terrestrial and aquatic generated in seasonally available floodplain hab-
components are among the most important pro- itats by algae, forest vegetation, and aquatic
cesses of Amazonian ecosystems. Floodplain plants plays a pivotal role in subsidizing aquatic
wetlands controlled by the seasonal flood pulse of food webs and commercial fisheries across the
white-water rivers are probably the best-docu- Amazon (Benedito-Cecilio et al. 2000, Santos et al.
mented examples of the importance of ATTZ in 2017, Correa and Winemiller 2018).
the Amazon basin (Junk 1984). These Amazonian
floodplains, which are among the most produc- Massive annual fish migrations transfer a small
tive natural systems on Earth, originate from the portion of Andean-derived energy and nutrients
accumulation of large sediment loads drifting from the white-water floodplains to the nutrient-
from the Andes, fueled by their associated nutri- poor black- or clear-water tributaries (see details
ents (Junk 1984; Melack and Forsberg 2001; below). Another perfect illustration of the inti-
McClain and Naiman 2008). Complex floodplain mate ecological interactions between the aquatic
macrophyte and forest communities have and terrestrial systems is the ancient mutually
adapted to these seasonal sediment fluxes and beneficial co-evolution and co-adaptation be-
year-round lateral exchanges between the main tween trees and fishes in Amazonian floodplains.
channel of rivers and their floodplains. Most tree species produce fruit during the high-
water season when fish invade the flooded forest
Terrestrial primary production, organic matter, (Ferreira et al. 2010; Hawes and Peres 2016).
and nutrients captured when floodwaters invade Hundreds of fish species have evolved frugivory
the floodplains decompose or are consumed by habits and may have been the first vertebrate
organisms become the basis of the aquatic food seed dispersers in the Amazon (Goulding 1980;
chain (Junk 1984; Melack and Forsberg 2001). Correa and Winemiller 2014; Correa et al. 2015a).
Part of this productivity goes back to the river’s They eat fruits falling in the water from flood-
main stem through the many organisms that plain trees and disperse their seeds over long
move between the floodplains and the river, in- distances, improving their germination and
cluding large numbers of fishes during massive thereby contributing to the maintenance of the
annual migrations (Goulding 1980, 1993). Flood- flooded forest (Goulding 1980; Kubitzki and Zi-
plains play crucial roles as feeding grounds and burski 1994; Waldhoff et al. 1996; Correa et al.
nursery areas for many fishes (Lima and Araujo- 2015a, b). In addition to fruits, fish also consume
Lima 2004; Castello et al. 2015, 2019). For in- copious amounts of invertebrates that undergo
stance, most commercially important fishes sup- vertical migrations toward the forest canopy dur-
porting large fisheries in the Amazon basin are ing the flood season. The consumption of leaf-
detrivore, herbivore, and omnivore species eating insects and carnivorous invertebrates
24
Science Panel for the Amazon
Chapter 4: Biodiversity and Ecological Functioning in the Amazon
that, in turn, predate upon leaf-eating insects the total flora range from 15,000 – 55,000. As in
creates an indirect feeding link between fish and other tropical areas, Fabaceae (the bean family)
trees. Whether directly or indirectly, flooded for- is the most abundant and species-rich of all
ests provide a critical terrestrial subsidy to river- woody plant groups. South America and the Am-
ine fishes, particularly in nutrient-poor black- or azon are also renowned for their great abun-
clear-water rivers (Correa and Winemiller 2018). dance and richness of palms.
The flood pulse influences multiple aspects of The Amazon region holds the largest tropical
fish reproductive strategies, including fecundity wetland system on Earth, home to 15% of all
(number of eggs), age at first reproduction, num- known fish species (see Chapter 3, Jézéquel et al.
ber of reproductive episodes per year, and paren- 2020).
tal care (Tedesco et al. 2008). As a result, changes
in water levels affect fish species differently, and Its rivers are classified as white-water (rivers car-
fishing yields can lag 2-3 years. The flood pulse rying sediments from the Andes); clear-water
also affects the movement patterns of terrestrial (draining the two shield areas); and black-water
animals between floodplain and adjacent terra (draining the white sand areas). The water type
firme forests. During the flood period, abundant determines the forest type along the rivers, with
fruits attract frugivorous monkeys to floodplain igapó forest growing in sediment-poor clear and
forests, while kingfishers track fish movement to black-waters floodplains, and várzea floodplain
the interior of flooded forests. During the dry pe- forests in white, sediment-rich waters. The phys-
riod, seedling germination drives the movement ical-chemical characteristics of the different wa-
of terrestrial animals to floodplain forests, while ter types, particularly electrical conductivity and
hummingbirds take advantage of the synchro- turbidity are major factors shaping fish commu-
nicity in flower production (Haugaasen and nities in rivers and associated floodplains. The
Peres 2007, Beja et al. 2009). Moreover, flooding flood pulse causes marked periods of floods and
enhances habitat heterogeneity in floodplain for- droughts, which drive physical, biological, and
ests, which influences the formation of unique ecological processes, from sediment transport to
bird, bat, and amphibian communities not found fish migration, and together with the elevational
in adjacent terra firme forests (Beja et al. 2009, Pe- gradients in the floodplain are factors that favor
reira et al. 2009, Ramalho et al. 2018). the maintenance of various plant communities.
The white-water wetlands are probably the best-
4.4. Conclusions documented examples of the importance of the
aquatic-terrestrial transition zone and among
The Amazon biogeographical region covers ~7 the most productive systems on the planet.
million km2, 5.79 million km2 of which are low-
land tropical rainforests. We have shown that as Variation in gross primary productivity between
well as climate, soil has a powerful influence on forest sites ranges from 33 to 38 Mg C ha-1 yr-1 for
species richness and composition and on forest more humid forests (in the west and north) to
function. Based primarily on the geological age of lower values of 25 to 30 Mg C ha-1 yr-1 in drier for-
parent material and soil nutrients, the Amazon ests of the Brazilian Shield and central Amazon.
can broadly be divided into six regions (Figure It is also partly driven by soil characteristics. Cli-
4.3). mate nevertheless also impacts the rate of wood
production, and the prevailing baseline climate
The total species richness of the Amazon is still has consequences for forest carbon storage and
actively debated. A well-supported estimate for biodiversity. Both worldwide and in the Amazon,
trees (diameter >10 cm) is 16,000, of which wood production is suppressed in the most ex-
~10,000 have been collected there. Estimates of treme seasonal tropical forest climates with high
25
Science Panel for the Amazon
Chapter 4: Biodiversity and Ecological Functioning in the Amazon
maximum temperatures and high seasonal wa- Allan E, Manning P, Alt F, et al. 2015. Land use intensification
alters ecosystem multifunctionality via loss of biodiversity
ter deficits. This means that some Amazonian
and changes to functional composition. Ecol Lett 18: 834–
forests are already at the climatic limits capable 43.
of sustaining productive tropical forest ecosys- Álvarez Alonso J, Metz MR, and Fine PVA. 2013. Habitat Spe-
tems. Further heating or drying in the Amazon cialization by Birds in Western Amazonian White-sand
Forests. Biotropica 45: 365–72.
risks pushing its trees beyond critical physiolog-
Amaral IL do, Matos FDA, and Lima J. 2000. Composição flo-
ical thresholds. rística e parâmetros estruturais de um hectare de floresta
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Amazon Tree Diversity Network. 2021. Amazon Tree Diver-
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plications for maintaining these ecosystems in 2008. Geological differentiation explains diversity and
the long-term to understand the truly composition of fish communities in upland streams in the
southern Amazon of Colombia. J Trop Ecol 24: 505–15.
astounding ecological and evolutionary rela-
Arroyo-Kalin M. 2010. The Amazonian formative: crop do-
tionships among species and ecosystems. mestication and anthropogenic soils. Diversity 2: 473–504.
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forests, but also all the animal and plant spe- history and crop cultivation in pre-Columbian Amazonia.
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level conservation initiatives, maintain core
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wide-ranging species, migratory species, in- and carbon-cycle effects of large-scale deforestation. Proc
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