Evidence For Protection of Nitrogenase From O2 by
Evidence For Protection of Nitrogenase From O2 by
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Author for correspondence : J. K. Vessey. Tel : j1 204 474 8251. Fax : j1 204 474 7528.
e-mail : kIvessey!umanitoba.ca
on a semi-solid medium (Cavalcante & Do$ bereiner, maximum penetration depth of the laser (120 µm). A montage
1988). Under these conditions, distinct colonies are not of the Z-series was produced using Bio-Rad’s Confocal
formed ; rather, the bacteria grow just below the surface Assistant v. 4.02.
of the media. This behaviour may help to optimize the For light microscopy, a freeze-substitution method was used
O flux to the bacterium as seen in other aerotactic because standard fixatives flooded over the agar surface caused
#
diazotrophs (Zhulin et al., 1996). On solid medium, the colonies to rupture. Five-day-old colonies of G. diazotro-
distinct, superficial colonies of G. diazotrophicus form phicus JO-2, supported by small pieces of the subtending LGI-
thick, mucilaginous matrices and are able to grow on N P agar, were plunged into the freezing mixture (isopentane\
as the sole nitrogen source at 20 kPa O (Dong et al.,# methyl cyclohexane, 1 : 1, at the melting point). Freeze sub-
1994). Pan & Vessey (2001) showed #that bacterial stitution in dry acetone resulted in the formation of sucrose
respiration and nitrogenase activity by G. diazotrophi- crystals (from the medium), which damaged the structure of
cus in colonies adapted over long-term exposures (i.e. the colonies. The colonies were therefore freeze-substituted in
methanol\acrolein (10 : 1) at k80 mC for 7 days. Under these
several days) to different atmospheric pO (10, 20 and
30 kPa). Optimal nitrogenase activity by G.#diazotrophi-
conditions, sucrose crystals formed at the bottom of the vial or
on the surface of the agar, from which they were easily
cus colonies occurred at or slightly above (i.e. j10 kPa) removed.
the O concentrations at which they were grown (Pan &
# 2001).
Vessey, Freeze-substituted colonies were gradually warmed (k20 mC
overnight, then j5 mC for 24 h), rinsed (3i10 min each) in
Since nitrogenase is active in G. diazotrophicus colonies methanol on ice, post-fixed with 1 % OsO in methanol for 1 h
%
grown on solid media, the bacterium must have means on ice, then rinsed again with three changes of methanol. The
of ensuring an appropriate concentration and flux of O methanol was replaced by the transition solvent acetone in a
to balance aerobic respiration and nitrogenase activity.# graded series (5, 10, 20, 50, 70, 90 and 100 % acetone ; two
In this study, we test the hypothesis that G. diazotro- 10 min changes per step). Colonies were gradually infiltrated
phicus positions itself within the mucilaginous matrix of in Spurr’s resin monomer mixture (Spurr, 1969), with the
concentration of the resin in acetone reaching 5 % at 90 min,
its colony to achieve an appropriate O environment for
nitrogenase activity, and that an intact# colony structure
10 % at 150 min, 25 % at 210 min and 75 % at 330 min. The
vials were then covered with perforated foil to allow evap-
is required to maintain this nitrogenase activity. This oration of the remaining acetone overnight. The next day,
hypothesis was tested by comparing G. diazotrophicus resin in the vials was replaced with 100 % resin and poly-
colony structure when grown on solid medium under 2 merized at 70 mC overnight. Mid-colony transverse sections
and 20 kPa pO , correlating nitrogenase activity to were cut with glass knives, stained with toluidine blue O
# and observing nitrogenase activity
colony development, (0n05 % in benzoate\borate buffer at pH 4n4), mounted in
in response to disruption of colony structure. immersion oil and viewed with an Olympus Vanox micro-
scope using phase-contrast and brightfield optics. Trans-
mission electron microcopy was performed to confirm that
METHODS stained bodies seen in the light microscopy corresponded to
bacteria (data not shown).
Assessment of colony structure. G. diazotrophicus strain JO-
2 was originally isolated from a Cuban line of sugarcane Observation of nitrogenase activity. Nitrogenase activity was
(Dong et al., 1995) and strain PAL 5 (ATCC 49037) was assayed for developing G. diazotrophicus colonies and for
originally isolated from sugarcane in Brazil (Gillis et al., 1989). mature colonies before and after physical disruption. Nitro-
Colonies were cultured at 30 mC in Petri dishes on a modified genase activity was measured by H evolution in the presence
#
version of LGI-P medium the same as that described in Pan & of Ar\O (Hunt & Layzell, 1993) in a flow-though gas-
#
Vessey (2001) except that sugarcane extract was not added to exchange system (Pan & Vessey, 2001). To assess the effect of
the medium. This medium is free of mineral nitrogen. Colonies physical disruption of colony structure on nitrogenase activity,
were grown for 4–5 days at either 2 or 20 kPa O , and N was G. diazotrophicus PAL 5 was grown on solid, modified LGI-P
# # medium (Pan & Vessey, 2001). At 6 days after inoculation
used to bring the gas blends to 100 kPa (Pan & Vessey, 2001).
At this stage of development, colonies were of similar size in (DAI), 20 Petri dishes containing 100–150 colonies per dish
both pO treatments. were placed in the gas-exchange system. A gas mixture of
# Ar\O (80 : 20) was passed through the chamber at the rate
Colony structure was examined in both live, intact colonies #
of 500 ml min−". Hydrogen evolution of the colonies was
and fixed, sectioned colonies. Cells of G. diazotrophicus recorded after 1 h, then the plates were removed from the
accumulated the pH indicator bromothymol blue from the chamber. The colonies on each plate were gently disrupted by
LGI-P medium. Fluorescence of the pH indicator permitted using a glass rod to smear the colonies on the surface of the
the visualization of cells within live colonies using confocal agar to approximately twice their original surface area. The
laser scanning microscopy (CLSM). A minimum of six plates were returned to the chamber along with the bent glass
randomly selected 4-day-old colonies of G. diazotrophicus rod, and once again exposed to the Ar\O mixture. Hydrogen
PAL 5 from each of the two pO treatments were examined #
# evolution by the disrupted colonies was recorded after 1 h and
using a Bio-Rad MRC600 CLSM equipped with a 514 Argon reported as nmol H h−" per colonyp.
laser utilizing a GHS filter block (514 nm DF excitation\ #
550 nm LP emission). An inverted stage and 32i open air To assess the effect of colony development and morphology
objective were used to view the colonies, which were removed on nitrogenase activity, G. diazotrophicus PAL 5 was inocu-
with a thin layer of subtending agar from the plates on which lated onto Petri dishes containing solid, modified LGI-P
they were grown. Optical sections (Z-series) were initiated at medium (Pan & Vessey, 2001) and incubated at 30 mC. Discrete
the top of the colony mucilage and collected at 5 µm intervals colonies were visible at 2 DAI. Nitrogenase activity of the
down through each colony toward the agar substrate, to the intact colonies was measured daily from 3 to 8 DAI by H
#
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Colony structure of G. diazotrophicus
(a) (b)
.................................................................................................................................................................................................................................................................................................................
Fig. 3. Serial optical sections (Z series) at low magnification down through intact, live colonies of G. diazotrophicus
grown at an atmospheric pO2 of 20 kPa (a) and 2 kPa (b) for 4 days. Reading from left to right and top to bottom, optical
sections start at the colony surface (section 1) and each image of the montage is 5 µm deeper into the colony to a depth
of 100 µm (section 20). Cells were stained with bromothymol blue absorbed from the culture medium and viewed by
CLSM. Because of the fluorescence of the bromothymol blue, the bacterial cells fluoresce white. The relative intensity of
the whitish fluorescence indicates the relative density of cells. The diameter of each colony was approximately 0n8 mm.
Note that the highest density of cells is located 85–100 µm from the surface (sections 17–20) of the colony grown under
20 kPa O2 (a) and only 45–60 µm from the surface (sections 9–12) of the colony grown under 2 kPa O2 (b).
2a) than the uppermost population of the colonies dome-shaped colony. Because the penetration of the
grown at 2 kPa O (Fig. 2b). These images also more CLSM system was limited to just beyond the upper
# population of bacteria at the base
clearly show the lower 100 µm of the colony, the lower population of cells near
of the colonies in both treatments. It is unknown if these the base of the colonies (Fig. 2) could not be imaged.
lower populations of bacteria represent dead or live The microscopic imaging of G. diazotrophicus colonies
cells. Some smearing of stain and vertical striations in (Figs 1, 2 and 3) clearly indicates that the uppermost
the images (especially Fig. 2b) are scratches in the population of bacteria of colonies grown at 20 kPa O is
embedding resin due to fine sucrose crystals, as seen in #
located deeper in the colony matrix than that of colonies
Fig. 1. grown at 2 kPa O . Since nitrogenase activity by G.
Because fixation processes have the potential of disrupt- #
diazotrophicus colonies is known to adapt in the long
ing the structure of what is being observed, live colonies term to changes in atmospheric pO (Pan & Vessey,
grown at 2 and 20 kPa O were also observed by CLSM. #
2001), the microscopic evidence presented here suggests
The difference in location# of the upper population of that the bacteria use the path-length of mucilage between
bacteria between the pO treatments was also evident in the surface of the colony and the site of nitrogenase
#
intact colonies of G. diazotrophicus (Fig. 3). Each panel activity to affect the rate of O diffusion and achieve a
in these images represent a 5 µm optical section through proper flux of O for aerobic # respiration without
a living colony, starting at the top of the dome of the #
inhibiting nitrogenase activity. Bacterial mucilage is
colony (upper left panel) and moving down towards known to decrease the rate of O diffusion to cells
the base of the colony (lower left panel). The whitish (Brown, 1970). The presence of #extracellular poly-
florescence indicates the presence of bacteria due to saccharide surrounding Beijerinckia derxii cells is neces-
laser-induced excitation of bromothymol blue bound sary to maintain nitrogenase in this organism (Barbosa
to bacterial capsular material. For colonies grown at & Alterthum, 1992). Derxia gummosa forms small non-
20 kPa O , the highest density of the upper population fixing colonies if grown at 20 kPa O ; however if grown
# located at a depth of 85–100 µm below the
was typically at 5 kPa O , the bacterium forms# large, highly mu-
highest point of the colony surface (Fig. 3a). At 2 kPa #
cilaginous colonies which fix N (Hill, 1971 ; Hill et al.,
O , the majority of cells of the upper population was 1972). The motile diazotroph #Azospirillum brasilense
#
typically located only 45–60 µm below the top surface of (Zhulin et al., 1996) displays aerotaxis within suspen-
the mucilage (Fig. 3b). The haloing effect seen in the sions to achieve the appropriate O environment for N
sections from 60 to 95 µm (Fig. 3b) shows that this upper fixation. G. diazotrophicus is also# motile (Gillis et al.,#
population of bacteria is following the contour of the 1989) ; however it is unknown at this time whether, if
2296
Colony structure of G. diazotrophicus
.....................................................................................................
Fig. 4. Time series of a G. diazotrophicus
colony illustrating the morphological
changes in the colony as it develops from
4 to 7 days (d) after inoculation (DAI).
Colonies were grown on solid medium at
30 mC at an atmospheric pO2 of 20 kPa. Note
that by 7 DAI, the colony has ‘ slumped ’ and
breakdown in colony structure is coincident
with a decline in nitrogenase activity (see
text for details).
2297
Z. Dong and others
rapid increase in O flux to G. diazotrophicus with Brown, D. E. (1970). Aeration in the submerged culture of micro-
#
disruption of colony structural integrity could result in a organisms. Methods Microbiol 2, 125–174.
reversible inhibition of nitrogenase activity (Burris, Burris, R. H. (1991). Nitrogenases. J Biol Chem 266. 9339–9342.
1991). Cavalcante, V. A. & Do$ bereiner, J. (1988). A new acid-tolerant
nitrogen-fixing bacterium associated with sugarcane. Plant Soil
Physical disturbance of the colonies by manipulation 108, 23–31.
with a glass rod resulted in a much greater decline in Dong, Z., Canny, M. J., McCully, M. E., Roboredo, M. R., Cabadilla,
nitrogenase activity (96n7 %) than that caused by the C. F., Ortega, E. & Rodes, R. (1994). A nitrogen-fixing endophyte
‘ slumping ’ of colonies due to ageing between 6 and 8 of sugarcane stems. A new role for the apoplast. Plant Physiol 105,
DAI (Fig. 5b ; a 24 % decline in nitrogenase activity). 1139–1147.
However, this is not unexpected as the smearing of the Dong, Z., Heydrich, M., Bernard, K. & McCully, M. E. (1995).
colony with the glass rod is a much more severe physical Further evidence that the N fixing endophytic bacterium from
#
disturbance than that induced by colony slumping. the intercellular spaces of sugarcane stems is Acetobacter
diazotrophicus. Appl Environ Microbiol 61, 1843–1846.
Gillis, M., Kersters, K., Hoste, B., Janssens, D., Kroppenstedt,
R. M., Stephan, M. P., Teixeira, K. R. S., Do$ bereiner, J. & De Ley, J.
Conclusion (1989). Acetobacter diazotrophicus sp. nov., a nitrogen-fixing
acetic acid bacterium associated with sugarcane. Int J Syst
The results of both the imaging of colonies grown at Bacteriol 39, 361–364.
different pO values and the correlation of nitrogenase Hill, S. (1971). Influence of oxygen concentration on the colony
activity with# colony intactness are consistent with the type of Derxia gummosa grown on nitrogen free medium. J Gen
hypothesis that the mucilaginous matrix of G. diazo- Microbiol 67, 77–83.
trophicus colonies is important in the protection of Hill, S., Drozd, J. W. & Postgate, J. R. (1972). Environmental
nitrogenase activity by the bacterium from excessive O effects on the growth of nitrogen-fixing bacteria. J Appl Chem 22,
flux. Likewise, the position of G. diazotrophicus within# 541–558.
the colony appears to be a component of the bacterium’s Hunt, S. & Layzell, D. B. (1993). Gas exchange of legume nodules
long-term adaptation to changes in pO in the sur- and the regulation of nitrogenase activity. Annu Rev Plant Physiol
rounding atmosphere. However, the actual # concen- Plant Mol Biol 44, 483–511.
tration of free and dissolved O within the colonies at Oresnik, I. J. & Layzell, D. B. (1994). Composition and distribution
the sites of nitrogenase activity #is as yet unknown. Reis of adenylates in soybean (Glycine max L.) nodule tissue. Plant
& Do$ bereiner (1998) found that nitrogenase activity of Physiol 104, 217–225.
G. diazotrophicus in liquid cultures was maximal when Pan, B. & Vessey, J. K. (2001). Response of the endophytic
the culture was at equilibrium with 0n2 kPa O in the gas diazotroph Gluconacetobacter diazotrophicus on solid media
phase. However, the actual concentration of# dissolved to changes in atmospheric pO . Appl Environ Microbiol 67,
#
O at the site of nitrogenase activity in any medium is 4694–4700.
#
dependent upon the concentration of O in the gas Reis, V. M. & Do$ bereiner, J. (1998). Effect of high sugar
phase, the diffusion rate through the medium, # and the concentration on nitrogenase activity of Acetobacter diazotro-
rate of O consumption by bacterial respiration (Hunt phicus. Arch Microbiol 171, 13–18.
& Layzell, # 1993). The current study supports the
Robson, R. L. & Postgate, J. R. (1980). Oxygen and hydrogen in
hypothesis that G. diazotrophicus utilizes the path- biological nitrogen fixation. Annu Rev Microbiol 34, 183–207.
length of colony mucilage between the atmosphere and Spurr, A. R. (1969). A low viscosity epoxy resin embedding
the bacteria to achieve this optimal flux and con- medium for electron microscopy. J Ultrastruct Res 26, 31–43.
centration of O for respiration and nitrogenase activity.
# Sutherland, I. W. (1999). Polysaccharases for microbial exopoly-
saccharides. Carbohydr Polymers 38, 319–328.
van Cauwenberghe, O. R., Newcomb, W., Canny, M. J. & Layzell.
D. B. (1993). Dimensions and distribution of intercellular spaces
ACKNOWLEDGEMENTS in cryoplaned soybean nodules. Physiol Plant 89, 252–261.
This study was funded by grants from Cargill Ltd, Agriculture Yamada, Y., Hoshino, K. & Ishikawa, T. (1997). The phylogeny of
and AgriFood Canada, and the Natural Sciences and En- acetic acid bacteria based on the partial sequences of 16S
gineering Research Council (NSERC) of Canada. ribosomal RNA : the elevation of the subgenus Gluconoaceto-
bacter to generic level. Biosci Biotechnol Biochem 61, 1244–1251.
Zhulin, I. B., Bespalov, V. A., Johnson, M. S. & Taylor, B. L. (1996).
Oxygen taxis and proton motive force in Azospirillum brasiliense.
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