BBOC407 - Module 1
BBOC407 - Module 1
Module 1
Introduction
Biology is the branch of science that primarily deals with the structure, function, growth,
evolution, and distribution of organism. As a science, it is a methodological study of life and
living things. It determines verifiable facts or formulates theories based on experimental findings
on living things by applying the scientific methods. An expert in this field is called a biologist.
Importance of Biology:
There are numerous indications of the importance of biology. Biology is primarily concerned with
studying life. In addition, it offers a thorough scientific explanation of how all living and non-
living things interact with one another. It provides information about various life forms.
Additionally, biology includes various areas of study concerned with the sustainability of life,
such as the study of the human body and the environment, the ecosystem, the quality of food, the
causes of disease, and the discovery of new medications.
The study of life has influenced how the world is today. It has also provided a multitude of
reliable and credible explanations for why things occur more scientifically.
Introduction to Cells:
Cells are the fundamental units of life, representing the smallest structure capable of exhibiting
all the properties of living organisms.
They range in size from microscopic bacteria to complex, multi-cellular animals like humans.
Types of cells:
Prokaryotic cells: Simple cells lacking a nucleus and membrane-bound organelles. Examples
include bacteria.
Eukaryotic cells: Complex cells with a nucleus and membrane-bound organelles. Examples
include plant and animal cells.
Importance of Cells:
Cells are the building blocks of life and form the basis of all living organisms.
Understanding cells is crucial for engineers in various fields, including biotechnology,
biomedical engineering, and bioinformatics.
Engineers apply principles of cell biology to develop technologies and solutions for medical
diagnostics, therapeutics, and environmental remediation.
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Conclusion:
An understanding of cells as the basic unit of life is essential for engineers working in
biologically inspired fields.
By integrating principles of cell biology with engineering methodologies, engineers can
contribute to advancements in healthcare, biotechnology, and environmental sustainability.
Collaboration between engineers and biologists fosters innovation and enables the development
of solutions to address pressing global challenges.
Structure of a Cell:
2. Cytoplasm:
The cytoplasm is present both in plant and animal cells. They are gel-like substance filling the
cell's interior.
They are mainly composed of water, organic and inorganic compounds.
It contains organelles, dissolved nutrients, enzymes, and other molecules necessary for
controlling the entire cellular process (metabolic activity/chemical reactions).
3. Nucleus:
Nucleus is the largest organelle, which functions as the control centre of the cell and is the
storehouse of the cell’s genetic material (DNA) organized into chromosomes.
It is found in all eukaryotic cells and is protected by a double membrane.
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By structure, it is the dark, round and surrounded by a nuclear membrane, which is a porous
membrane (like cell membrane) and forms a wall between cytoplasm and nucleus.
Within the nucleus, there are tiny spherical bodies called nucleolus.
Nucleus regulates gene expression and controls cellular activities through the synthesis of
messenger RNA (mRNA).
4. Cell Organelles:
Source: Byjus
Mitochondria: Powerhouses of the cell, responsible for generating ATP through cellular
respiration. It is a double membrane-bound, sausage shaped organelle, found in almost all
eukaryotic cells. They usually vary in size and found either round or oval in shape. Mitochondria
have their own circular DNA, RNA molecules, ribosomes, and few other molecules that help in
protein synthesis.
Mitochondria
Source: Byjus
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Source: Byjus
Ribosomes: Ribosomes are non-membrane bound and important cytoplasmic organelles found in
close association with the endoplasmic reticulum. They are found in the form of tiny particles in a
large number of cells. They are named as the 70s (found in prokaryotes) or 80s (found in
eukaryotes). The letter S refers to the density and the size, known as Svedberg’s Unit. The
primary function of the ribosomes includes protein synthesis in all living cells that ensure the
survival of the cell.
Ribosome
Source: Byjus
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Golgi apparatus: Modifies, sorts, and packages proteins and lipids for transport within the cell or
secretion. Golgi apparatus
Lysosomes: Contain enzymes for intracellular digestion and recycling of cellular waste.
Vacuoles (in plant cells): Store water, ions, and nutrients, providing structural support.
Chloroplasts (in plant cells): Chloroplasts are double membrane bound organelles, which
usually vary in their shape to spherical, discoid, oval and ribbon. They are present in leaves and
are the site of photosynthesis, converting light energy into chemical energy (glucose).
Chloroplasts also contain double-stranded circular DNA, 70S ribosomes, and enzymes which are
required for the synthesis of carbohydrates and proteins.
Source: GFG
Functions of a cell:
1. Metabolism: Chemical processes that sustain life, including energy production, biosynthesis of
molecules, and nutrient breakdown.
2. Transport: Movement of molecules across the cell membrane through passive diffusion,
facilitated diffusion, osmosis, and active transport
3. Protein synthesis: Involves transcription of DNA into mRNA in the nucleus, followed by
translation of mRNA into proteins on ribosomes.
4. Growth and reproduction: Cells grow and divide to produce new cells through processes like
mitosis and meiosis.
5. Cell signalling: Cells communicate with each other through chemical signals, allowing them to
coordinate activities and respond to changes in their environment. Signal transduction pathways
relay information from the cell surface to the nucleus, triggering appropriate cellular responses.
6. Homeostasis: Regulation of cell internal environment to maintain stable conditions necessary for
survival.
Understanding the structure and functions of cells is fundamental to biology, medicine, and
engineering. It provides insights into the mechanisms underlying life processes and facilitates the
development of novel therapies, technologies, and solutions to address various challenges.
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Stem Cells:
1. Definition: Stem cells are undifferentiated cells that have the ability to differentiate into
specialized cell types. They can self-renew, meaning they can replicate themselves to produce
more stem cells.
2. Disease modelling:
Stem cells provide valuable tools for studying diseases in vitro.
iPSCs derived from patients with genetic disorders can be differentiated into relevant cell
types, allowing researchers to investigate disease mechanisms and screen potential
therapeutics.
5. Tissue engineering:
Stem cells are integral to tissue engineering approaches aimed at creating functional,
transplantable tissues and organs.
They can be combined with biomaterials and growth factors to generate three-dimensional
structures that mimic native tissue architecture.
Source: MedAccess
Stem cells offer versatile tools for basic research, therapeutic development, and regenerative
medicine. Continued advancements in stem cell biology and technology hold promise for
addressing various medical challenges and improving patient outcomes
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Biomolecules:
Definition: Biomolecules, also called biological molecules, that are essential for life processes
and are produced by cells and living organisms. They include a wide range of organic molecules,
such as carbohydrates, lipids, proteins, and nucleic acids.
Types of Biomolecules: The four major types of biomolecules are carbohydrates, lipids, proteins,
and nucleic acids.
Source: GFG
1. Carbohydrates:
Carbohydrates (also referred to as ‘saccharides’) or carbs are organic molecules made up of
carbon, hydrogen, and oxygen in a ratio of 1:2:1. They are essential energy sources (e.g., glucose)
and structural components (e.g., cellulose in plant cell walls) of all life, cell recognition molecules
(e.g., glycoproteins on cell surfaces).
They are among the most abundant biomolecules on Earth. They are also known as saccharides,
the word saccharides come from Greek word sakcharon which means sugar. Along with proteins
and fats, carbohydrates are one of three main nutrients found in foods and drinks. They are built
from four types of sugar units—monosaccharaides, disaccharides, oligosaccharides, and
polysaccharides. The carbohydrates which are soluble in water and sweet in taste are called
‘sugars’. Our body utilizes this sugar as a source of energy for the cells, tissues and organs. The
extra amount of energy or sugar is stored in our muscles and liver for further requirement.
2. Oligosaccharides: The oligosaccharides (Oligo: few) are carbohydrates which yield a definite
number (2-9) of monosaccharide molecules on hydrolysis.
3. Polysaccharides: The carbohydrates which have higher molecular weight, which yield many
monosaccharide molecules on hydrolysis. e.g., Starch, glycogen, Dextrin, Cellulose etc.
In general mono and oligosaccharides are crystalline solids, soluble in water and sweet to taste,
and are collectively known as sugars. The polysaccharides on the other hand are amorphous,
insoluble in water and tasteless, and are called non-sugars.
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Functions of carbohydrates:
Carbohydrates are helpful in performing many functions such as breakdown of protein
molecules, dehydration as well as eliminating ketosis.
They serve as primary energy sources.
They help in the regulation of blood glucose.
They provide the carbon skeleton for the synthesis of some non-essential amino acids.
2. Lipids:
Another key biomolecule of living organisms, lipids are a broad group of naturally occurring
molecules which includes fats, waxes, sterols, fat-soluble vitamins (such as vitamins A, D, E &
K), mono-glycerides, di & tri-glycerides, phospholipids and others.
Lipids fulfil a variety of roles, including serving as a source of stored energy and acting as
chemical messengers. They also form structural components of cell membranes, which separate
cells from their environments and compartmentalize the cell interior, giving rise to organelles,
such as the nucleus and the mitochondrion, in higher (more complex) organisms.
Lipids may be broadly defined as hydrophobic or amphiphilic small molecules; the amphiphilic nature
of some lipids allows them to form structures such as vesicles, multilamellar/unilamellar liposomes, or
membranes in an aqueous environment.
Biological lipids originate entirely or in part from two distinct types of biochemical subunits or
"building-blocks": ketoacyl and isoprene groups. Using this approach, lipids may be divided into eight
categories: fatty acyls, glycerolipids, glycerophospholipids, sphingolipids, saccharolipids, and
polyketides (derived from condensation of ketoacyl subunits); and sterol lipids & prenol lipids
(derived from condensation of isoprene subunits).
A biological membrane is a form of lamellar phase lipid bilayer. The formation of lipid bilayers is an
energetically preferred process when the glycerophospholipids described above are in an aqueous
environment. This is known as the hydrophobic effect. In an aqueous system, the polar heads of lipids
align towards the polar, aqueous environment, while the hydrophobic tails minimize their contact with
water and tend to cluster together, forming a vesicle; depending on the concentration of the lipid, this
biophysical interaction may result in the formation of micelles, liposomes, or lipid bilayers.
Some of the applications of lipids are, within the body, lipids function as an energy reserve, regulate
hormones, transmit nerve impulses, cushion vital organs, and transport fat-soluble nutrients. Fat in
food serves as an energy source with high caloric density, adds texture and taste, and contributes to
satiety (fullness). Lipid obtained from food waste was used as a potential feedstock for biodiesel
production using both a chemical catalyst and a biocatalyst.
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Lipids
3. Proteins:
Protein is found throughout the body, in muscle, bone, skin, hair, and virtually every other body
part or tissue. It makes up the enzymes that power many chemical reactions and the haemoglobin
that carries oxygen in our blood.
Talking more about proteins based on biomolecule concept, proteins are large biomolecules and
macromolecules that comprise one or more long chains of amino acid residues. In other words,
proteins are composed of amino acids linked by peptide bonds. There are 20 different amino acids
that can occur within a protein; the order in which they occur plays a fundamental role in
determining protein structure and function. Proteins themselves are major structural elements of
cells. They also serve as transporters, moving nutrients and other molecules in and out of cells,
and as enzymes and catalysts for the vast majority of chemical reactions that take place in living
organisms. Proteins also form antibodies and hormones, and they influence gene activity.
Proteins differ from one another primarily in their sequence of amino acids, which is dictated by
the nucleotide sequence of their genes, and which usually results in protein folding into a specific
3D structure that determines its activity. The genetic code is a set of three-nucleotide sets called
codons and each three-nucleotide combination designates an amino acid.
The process of synthesizing a protein from mRNA (messenger RNA) template is known as
translation. The mRNA is loaded onto the ribosome and is read three nucleotides at a time by
matching each codon to its base pairing anticodon located on a tRNA (transfer RNA) molecule,
which carries the amino acid corresponding to the codon it recognizes. The enzyme aminoacyl
tRNA synthetase "charges" the tRNA molecules with the correct amino acids. The growing
polypeptide is often termed the nascent chain. Proteins are always biosynthesized from N-
terminus to C-terminus.
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4. Nucleic acids: Among biomolecules, nucleic acids are one of the four major types of
macromolecules that are essential for all known forms of life. The nucleic acids consists of two
major macromolecules, namely Deoxyribonucleic acid (DNA) and Ribonucleic acid (RNA) that
carry genetic instructions for the development, functioning, growth and reproduction of all known
organisms and viruses. They have the unique function of storing an organism’s genetic code—the
sequence of nucleotides that determines the amino acid sequence of proteins, which are of critical
importance to life on Earth. Both consist of polymers of a sugar-phosphate-sugar backbone with
organic heterocyclic bases attached to the sugars.
The sugar in DNA is deoxyribose, while in RNA it is ribose. DNA contains four bases, cytosine
& thymine (Pyrimidine bases) and guanine & adenine (Purine bases). RNA uses the same
nitrogenous bases as DNA, except for Thymine. Thymine is replaced by Uracil (U) in RNA. The
DNA in vivo consists of two antiparallel strands intertwined to form the iconic DNA double-
stranded helix. The RNA is single stranded but may adopt many secondary and tertiary
conformations not unlike that of a protein.
The core structure of a nucleic acid monomer is the nucleoside, which consists of a sugar residue
+ a nitrogenous base. Adenosine, cytidine, uridine, and guanosine are examples for nucleosides.
When one or more phosphate groups are attached to a nucleoside at the 5’ position of the sugar
residue, it is called a nucleotide. Apart from serving as a structural unit of nucleic acids,
nucleotides may also serve as sources of chemical energy (e.g., adenosine triphosphate or ATP).
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Source: ThoughtCo
Source: Byjus
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Enzymes:
Enzymes are biological catalysts that speed up chemical reactions in living organisms. They are
crucial for various physiological processes, including metabolism, digestion, and cellular
signalling. Enzymes also help us with, breathing, building muscles, nerve functions and removing
toxins from our body. The nomenclature of enzymes is derived from their substrates or the
catalysed chemical reactions, and "ase" is usually added as a suffix. E.g., Lactase, cellulase,
protease etc.
Functions of Enzymes:
1. Catalysis:
The primary function of enzymes is to catalyse biochemical reactions by lowering the
activation energy required for the reaction to proceed.
Enzymes accelerate reaction rates without being consumed in the process, allowing cells to
maintain metabolic pathways and respond to changes in their environment.
2. Metabolism:
Enzymes play key roles in cellular metabolism, including the breakdown (catabolism) and
synthesis (anabolism) of molecules.
Catabolic enzymes facilitate the breakdown of complex molecules into simpler ones,
releasing energy in the process (e.g., digestive enzymes).
Anabolic enzymes are involved in the synthesis of complex molecules from simpler
precursors, requiring energy input (e.g., enzymes involved in protein synthesis).
3. Digestion:
Enzymes produced by the digestive system break down food molecules into smaller,
absorbable components.
For example, amylase breaks down carbohydrates into sugars, proteases hydrolyse proteins
into amino acids, and lipases cleave fats into fatty acids and glycerol.
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4. Cell signalling:
Some enzymes are involved in cell signalling pathways, transmitting signals from the cell
surface to the nucleus and regulating gene expression.
Protein kinases, for example, phosphorylate target proteins, altering their activity and
initiating cellular responses to extracellular signals.
Vitamins:
Vitamins are organic compounds that are essential for various physiological functions in the body.
They serve as coenzymes, precursors for hormones, antioxidants, and regulators of gene
expression.
Source: Medlife
Properties of Vitamins:
1. Organic compounds:
Vitamins are organic compounds essential for various physiological functions in the body.
They are required in small amounts for normal metabolism, growth, and development.
2. Micronutrients:
Vitamins are classified as micronutrients because they are needed in smaller quantities
compared to macronutrients like carbohydrates, proteins, and fats.
Despite their small requirement, vitamins play crucial roles in maintaining health and
preventing deficiency diseases.
3. Classification:
Vitamins are divided into two groups based on their solubility.
Water-soluble Vitamins: These include vitamin C and the B-complex vitamins (e.g., B1,
B2, B3, B5, B6, B7, B9, B12). They dissolve in water and are not stored in the body in
significant amounts. Excess water-soluble vitamins are excreted in urine.
Fat-soluble Vitamins: These include vitamins A, D, E, and K. They dissolve in fat and are
stored in the body's fatty tissues and liver. Fat-soluble vitamins can accumulate to toxic
levels if consumed in excess.
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4. Chemical structure:
Vitamins have diverse chemical structures and functions.
For example, vitamin A exists in various forms such as retinol, retinal, and retinoic acid,
while vitamin C is an antioxidant with the chemical name ascorbic acid.
5. Sources:
Vitamins are obtained from a variety of food sources, including fruits, vegetables, grains,
dairy products, meats, and fish.
Some vitamins can also be synthesized by the body or obtained through supplementation.
Functions of Vitamins:
1. Coenzymes and Cofactors:
Many vitamins serve as precursors or components of coenzymes, which are necessary for
enzyme catalysis in metabolic pathways.
Coenzymes facilitate chemical reactions by transferring functional groups between
molecules. For example, vitamin B6 is a precursor for the coenzyme pyridoxal phosphate,
which is involved in amino acid metabolism.
2. Antioxidant activity:
Some vitamins, such as vitamin C (ascorbic acid) and vitamin E (tocopherol), act as
antioxidants, protecting cells from damage caused by free radicals.
Antioxidants neutralize free radicals, unstable molecules that can cause oxidative stress and
damage to cellular structures, including DNA, proteins, and lipids.
3. Bone health:
Vitamins D and K are essential for bone health and mineral metabolism.
Vitamin D promotes calcium absorption in the intestine and helps maintain proper levels of
calcium and phosphate in the blood, crucial for bone mineralization.
Vitamin K is involved in the synthesis of proteins that regulate calcium deposition in bones
and prevent calcification of soft tissues.
4. Vision:
Vitamin A (retinol) is essential for vision, particularly in low-light conditions.
It is a component of rhodopsin, a pigment found in the retina of the eye that is involved in
the perception of light.
5. Immune function:
Several vitamins, including vitamin C, vitamin D, and vitamin E, play roles in supporting
immune function and protecting against infections.
Vitamin C is involved in the production and function of immune cells, while vitamin D
modulates immune responses and reduces the risk of autoimmune diseases.
6. Neurological function:
B-complex vitamins, such as thiamine (B1), riboflavin (B2), niacin (B3), and cobalamin
(B12), are important for neurological function and the synthesis of neurotransmitters.
Deficiencies in these vitamins can lead to neurological disorders, including peripheral
neuropathy, cognitive impairment, and mood disturbances.
Hormones:
Hormones are chemical messengers produced by endocrine glands and released into the
bloodstream to regulate physiological processes and maintain homeostasis in the body.
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Endocrine hormones
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Properties of Hormones:
1. Chemical nature:
Hormones are chemical messengers produced by endocrine glands and released into the
bloodstream.
They can be classified into different chemical categories, including peptides, steroids, and
amino acid derivatives.
2. Transport:
Hormones are transported throughout the body via the bloodstream.
Once released into the bloodstream, hormones travel to target cells or tissues, where they
exert their effects by binding to specific receptors.
3. Target specificity:
Hormones exert their effects on specific target cells or tissues that possess receptors for the
hormone.
The specificity of hormone action is determined by the presence of specific receptors on
target cells, which bind to the hormone with high affinity.
4. Regulation:
Hormone secretion is tightly regulated by various factors, including feedback mechanisms,
neurotransmitters, and other hormones.
Feedback mechanisms involve the monitoring of hormone levels in the bloodstream and the
subsequent modulation of hormone secretion by endocrine glands.
5. Half- life:
Hormones have different half-lives, which influence their duration of action.
Some hormones, such as peptide hormones, have short half-lives and exert rapid but
transient effects, while others, such as steroid hormones, have longer half-lives and exert
more prolonged effects.
Functions of Hormones:
1. Regulation of metabolism:
Hormones play key roles in regulating metabolic processes such as energy production,
storage, and utilization.
For example, insulin, produced by the pancreas, promotes the uptake of glucose by cells and
stimulates glycogen synthesis in the liver, thereby lowering blood glucose levels.
Thyroid hormones (e.g., thyroxine) regulate basal metabolic rate and influence energy
expenditure and nutrient metabolism.
2. Growth and development:
Hormones are crucial for growth and development from infancy through adulthood.
Growth hormone, produced by the pituitary gland, stimulates growth by promoting cell
division, protein synthesis, and bone growth.
Sex hormones, such as testosterone and estrogen, regulate secondary sexual characteristics
and reproductive function during puberty and adulthood.
3. Reproduction:
Hormones play essential roles in reproductive processes, including gamete production,
sexual differentiation, and pregnancy.
Gonadotropin-releasing hormone (GnRH), produced by the hypothalamus, stimulates the
release of follicle-stimulating hormone (FSH) and luteinizing hormone (LH) from the
pituitary gland, which regulate ovarian and testicular function.
Oestrogen and progesterone regulate the menstrual cycle and pregnancy in females, while
testosterone regulates spermatogenesis and male reproductive function.
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4. Stress response:
Hormones are involved in the body's response to stress, helping to mobilize resources and
adapt to challenging situations.
The hypothalamic-pituitary-adrenal (HPA) axis plays a central role in the stress response,
with hormones such as cortisol and adrenaline (epinephrine) mobilizing energy stores and
increasing heart rate and blood pressure.
5. Homeostasis:
Hormones help maintain homeostasis by regulating various physiological parameters,
including blood glucose levels, electrolyte balance, and fluid balance.
For example, parathyroid hormone (PTH) regulates calcium and phosphate levels in the
blood by stimulating calcium release from bones and increasing renal reabsorption of
calcium.
6. Behaviour and mood:
Hormones can influence behaviour, mood, and emotional responses.
For example, serotonin, dopamine, and norepinephrine are neurotransmitters that also act as
hormones, regulating mood, motivation, and cognitive function.
Understanding the properties and functions of hormones is essential for comprehending the
complex regulatory mechanisms that maintain physiological balance in the body. Dysregulation of
hormone levels can lead to various disorders and diseases, highlighting the importance of
hormonal balance for overall health and well-being.