Ratbiomethodologyhandouts
Ratbiomethodologyhandouts
This is a handout that accompanies a hands-on rat biomethodology workshop in the Laboratory
Animal Resources Center (LARC) and other institutions.
OBJECTIVES
A. Wear a minimum of a clean laboratory coat and gloves. The use of surgical masks or
respirators may assist in reducing allergen exposure.
C. If bitten:
Don’t punish the rat for its natural response! Calmly return the animal to its cage.
Wash the wound thoroughly with an antiseptic soap and water.
Cover the wound with a bandage.
Notify your immediate supervisor of the bite so that procedures appropriate to the
injury can be followed.
D. Rat psychology:
Rats are basically docile, curious animals and usually develop closer bonds with
humans than mice do.
Rats respond positively to quiet, gentle handling. They are normally not aggressive
(except for some strains/stocks, e.g. Fisher 344), but if frightened or distressed can
inflict painful bites.
Like any animal, rats are creatures of habit. Everyday events do not tend to stress or
excite rats. However, out of the ordinary events such as being picked up, handled,
and restrained are stressful and can result in the rats being fractious. Conditioning the
rats to handling and restraint will prevent the rats from associating being handled with
“negative” things (like being stuck with a needle) and often makes the animals much
easier with which to work.
Work quietly among the animals, and try to avoid performing procedures in the
animal housing room. This will minimize the excitement of the rats from smells and
noises, and will allow you to easily perform your tasks on a more tractable, less
stressed animal.
GENERAL INFORMATION
General Biology
The laboratory rat (Rattus norvegicus) is a mammal of the order Rodentia. The laboratory rat was
the first animal in which the primary reason for domestication was for use in scientific
endeavors. Rats are one of the most common (second to mice) laboratory animal used for
research.
Rats have several unique biological characteristics. The acute hearing of rats makes them
sensitive to ultrasounds and high pitched sounds. Rats have poor vision; they are unable to detect
color and are blind to long-wave (red) light. The rat’s tail is the principal organ for heat
exchange.
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Biological Data
The following table provides general biological data for many rats, however, for strained specific
characteristics go to
http://www.criver.com/flex_content_area/documents/rm_rm_n_techbul_spring_99.pdf and
http://www.taconic.com/wmspage.cfm?parm1=893.
Behavior
Rats are nocturnal and thus are active primarily during the night at which time they feed. During
the daytime, rats tend to rest and sleep. Handling animals during the night can be more difficult
due to this increase activity. The diurnal rhythm can be changed by a 12-hour shift in the light
cycle. It takes approximately two weeks for rats to adjust to this shift.
Rats tend to get along well with other rats. However, please realize that introducing two rats of
the same sex to each other after weaning age can result in fighting and, potentially, serious
injuries. Similarly, rats of the same sex that have been housed together may fight if separated and
later re-introduced. Male and female rats tend to accept each other. If one is to introduce post-
weaning rats that are strangers, one should take the following precautions: Introduce the rats
together into a clean cage so that neither rat has established the cage as their home territory.
Supervise the rats closely over the next hour or so to see how they do. Be prepared with another
cage to separate the rats if needed. The Laboratory Animal Resources Center can assist by
providing enrichment items for the cage that may serve as a distraction.
The Guide for the Care and Use of Animals indicates that animals that form social groups (such
as rats) should be housed with conspecifics (group housed). Rats can be single housed only for
clinical reasons or if scientifically justified (and approved in the IACUC protocol).
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Basic Husbandry
Most rats are housed in shoe box cages composed of a plastic (polycarbonate or polysulfone)
material with a stainless steel wire bar lid used to hold the water bottle and feed. Bedding is
placed directly into the shoe box cage allowing the absorption of urine. The type of cage in use
will generally hold up to three large adult rats. When removing the lid from this type of cage, it
is important to remove the water bottle to prevent spillage (unless automated watering is used). If
the cage is to be transported, the bottle should be turned sipper tube up to prevent spillage during
transport. However, you should remember to turn the bottle back over to allow access to water
after transport.
The animal care staff change the cages on a fixed schedule (frequency depends upon the type of
housing, bedding and research needs), thereby providing the animals a clean cage with new
bedding, food, and water. Water bottles and feed hoppers are checked daily by caretakers to
insure the provision of food and water and to monitor for health or other problems. Some rats are
housed on wire mesh bottom cages if scientifically justified and approved in the IACUC
protocol. This type of housing is not preferred and is used only when dictated by experimental
design.
Pelleted natural ingredient diets are used to feed all rodents and are composed primarily of cereal
grains supplemented with additional protein, vitamins and minerals. The water provided to the
rats is treated to make it as pure as possible. For rats housed under sterile conditions, the water is
autoclaved.
Two levels of barrier housing of rats are available. One level involves the housing of rats in a
cage as described above. However, in addition, the cage is fitted with a filter top (microisolater
top). This filter top allows pathogen exclusion and containment. LARC also maintains ventilated
cage racks which provide HEPA filtered supply and exhaust air to each individual cage. This
type of housing also provides for pathogen exclusion and containment. Depending upon the
needs of the investigator, a change-out hood can be placed in the animal room to allow for
pathogen containment and exclusion when the filter top is removed for cage change-outs or
animal manipulations. Also, arrangements can be made to have the entire cage and its contents
autoclaved to allow for a sterile environment in which the rats can live. Please contact LARC to
discuss the details of these housing options.
A health surveillance program is in place utilizing sentinel animals to detect the presence of
rodent pathogens. Rodent pathogens often do not produce clinical signs in affected animals but
their presence serves as an unwanted research variable.
Identification
Cage cards are utilized to identify the strain of rat, sex, number, principal investigator, and
IACUC protocol #. Cage cards should not be removed from the cage to avoid misidentification
of the animals. Temporary identification of individual rats can be accomplished by pen marks on
the tail, hair clipping or dyeing the fur. Pen marks will only last a few days whereas hair clipping
may last up to 14 days. Ear punch identification and ear tags can be utilized but may be
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obliterated by fighting between individuals. Microchips and tattoos have also been used for
identification.
Handling
When handling rats it is advisable to wear clean gloves to prevent the development of allergies
due to direct contact with animal allergens. Rats typically become accustomed to repeated
handling. In a naive animal, the temperament of the animal can be determined by placing the
hand into the cage to allow exploration by the animal prior to touching. Initial gentle stroking of
the animal followed by gradual grasping the animal will prevent startling the animal and
initiating an aggressive response.
Rats are normally lifted by grasping the whole body with the palm over the back, with the fingers
and the thumb behind the forearms. This extends the rat's forelimbs so that they may be
controlled. Holding with one hand is usually adequate for control, but the tail, rear legs or lower
part of body may be held by the other hand for close control, treatment, or examination. The use
of both hands is often necessary for rats weighing over 350 grams. Young rats may be handled
like mice (see Mouse Biomethodology handout). One should exercise caution when lifting rats
by the tail as they may strip the skin from the tail (de-gloving injury). This is particularly likely
for heavy rats (>450 grams). When picking up a rat by the tail, be sure to grasp the base of the
tail with the thumb and forefinger. For transporting short distances it is helpful to support the rat
with your arm or hand while holding the tail.
Rats may bite and certain strains/stocks are more aggressive than others (e.g., F344 rats tend to
be more aggressive than Sprague-Dawley), so care and experience are essential to safe handling.
Various commercial restraint devices are available for use with rats (see below).
Restraint Devices
Numerous types of restraint devices are commercially available to restrain rats. Quality devices
prevent the animal from turning around yet allow easy access to strategic parts of the animal.
Devices should also be easy to clean and provide adequate ventilation.
Sexing
Procedures:
1. With the non-dominant hand, grab the base of the tail with the thumb and index finger
to keep the rat from running away especially
if it is an aggressive rat. DO NOT suspend
the rat by the tail or the upper body for a
prolonged time period because of the stress
on the animal. Support the body weight
quickly.
2. Lift the rat out of cage and place in new
caging or on a firm surface or hands.
3. If the rat is docile, you may just grasp the rat
straight out of the cage with your hand.
4. With firm but gentle pressure, grasp the rat
around the thorax with the thumb and fingers
under each of the front legs. Alternatively,
one or two fingers can be in front of the
foreleg.
Procedures:
1. With the non-dominant hand, grab the base of the tail with the
thumb and index finger to keep the rat from running away.
2. With firm but gentle pressure, grasp the rat around the thorax
with the thumb and fingers under one front leg and under the
chin.
3. Alternatively, slide the thumb across the ventral thorax
and underneath both forelegs.
4. The rat is now ready for technical manipulations.
5. The base of the tail may be held or the rear quarters
supported by the other hand for additional control.
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Procedures:
Procedures:
Procedures:
1. Grab the base of the tail with the thumb and index
finger.
2. With the head first, place animal in DecapiCone.
3. Gentle restraint is
done by wrapping
DecapiCone around
snug around the
animal.
4. The animal is now
ready for technical manipulations such as IP
injections or decapitation. Note that decapitation of conscious rodents can only be
performed when scientifically justified and approved in the IACUC protocol.
Always use sterile syringes and needles for all procedures. To insure aseptic techniques and
sharp needles, the one time use of disposable supplies is strongly recommended. When
administering injections, select the smallest gauge needle possible to minimize tissue trauma and
injection discomfort. Before injecting the solution, always check for correct placement of the
needle by slightly pulling back the plunger of the syringe to create a vacuum. This is known as
aspiration. The signs to look for will vary with the injection site. If blood or other fluids are
aspirated, placement may be incorrect.
Due to the small muscle mass of many rodents, an intramuscular injection may cause discomfort
and local tissue irritation, especially if too large a volume of a solution or a solution with an
acidic or alkaline pH is administered. An understanding of anatomy and careful technique are
necessary to avoid the ischiatic (sciatic) nerve in the hind leg, just behind the femur. Injection
into or close to the nerve may lead to unnecessary discomfort, temporary lameness, or permanent
paralysis of the leg. As a result of nerve damage, an animal may chew off the affected extremity.
If too much blood is withdrawn too rapidly, or too frequently without replacement, one may
induce hypovolemic shock and/or anemia. As a general guide, up to 10% of the circulating blood
volume can be taken on a single occasion from normal healthy rats with minimal adverse effect
(rat blood volume = 70 ml/kg body weight). This volume may be repeated after 2-3 weeks. For
repeat bleeds at shorter intervals, a maximum of 1% of an animal's circulating blood volume can
be removed every 24 hours. However, care should be taken in these calculations as the
percentage of circulating blood will be about 15% lower in obese and older animals.
INJECTIONS EXCERCISES
BASIC PROCEDURE
Wipe the top of the drug bottle with alcohol before withdrawing the dose.
Slowly withdraw the dose and tap the air bubbles out of the syringe. Air bubbles injected
intravenously or intraarterially can potentially cause air emboli and associated problems.
Always check route of administration for the particular drug to be injected.
Procedures:
Direction of injection
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Direction of injection
B. Subcutaneous (SC) Injection
Materials: Disposable gloves, syringe (1-10 ml), hypodermic needle (22-30 ga), injection
article, isopropyl alcohol, gauze
Procedures:
Procedures:
2. Restrain rat by tilting body at a 450 angle with the head down or dorsal towel hold.
This will position the intestines cranial to the injection site.
3. Prep area with alcohol swab.
4. Insert needle into the rat’s lower right quadrant of
abdomen at a 300 angle.
5. Aspirate syringe to insure proper placement. Any sign
of blood or other fluid indicates improper placement; if
these are seen then to prevent inducing IP injection
peritonitis, remove area
Head down
syringe, discard, and use
new syringe, needle, and
article.
6. Administer article in a
steady, fluid motion.
Materials: Anesthetic, disposable gloves, syringe (1 ml), hypodermic needle (25-30 ga),
gauze, clippers, #40 blade, isopropyl alcohol
Procedures:
Note: Injection into the lateral tail vein in rats can be difficult due to the thickness and
toughness of the skin over the area of the vein. The secret of successful injection of the
tail vein is to dilate the veins. This has been accomplished in various ways such as the
following: Placing the tail in warm water (47 0C for about 1 minute (do not exceed 47 0C
as this can result in thermal injury to the tail); warming gauze in the warm water bath as
stated above and then wrap the tail on the gauze for about 1 minute; placing the animal in
an incubator (37° C) for 10 – 15 minutes; or wrapping the tail in an electric heating pad
that is warm (not hot) to the touch. In addition one can place a tourniquet around the
base of the tail to facilitate visualization of the vein. See illustration on tourniquet
preparation later in this handout. A rubber band and mosquito hemostat also make
suitable tourniquets.
The veins can be seen when the tip of the tail is lifted and rotated slightly in either
direction. The tip of the needle can be followed visually as it penetrates the vein. Trial
injection verifies proper needle placement. Also, accurate placement can be confirmed
when the vessel is visually flushed when the compound is administered. The formation
of a bleb at the site indicates improper placement of the needle. A second attempt can be
performed by removing the needle and trying a site on the same vessel in a more
proximal (closer to the animal’s body) location on the tail. Practice is essential.
Materials: Disposable gloves, plexiglas restraint box, syringe (1 ml), hypodermic needle
(25-30 ga), injection article, isopropyl alcohol, gauze, method to dilate the tail vein (see
below)
Procedures:
1. Restrain rat.
2. Prep tail with alcohol swab.
3. Needle placement should be no closer
to the body than half the length of the
tail.
4. With tail under tension, insert needle
into skin approximately parallel with the vein.
5. Insure proper placement by inserting needle at least 3 mm into lumen of vein.
6. Administer article in a slow fluid motion to avoid rupture of vessel.
7. Upon completion, insure good hemostasis before returning to cage.
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GAVAGE EXCERCISES
Procedures:
1. Measure the distance from the tip of nose to the last rib. This is
the length the needle should be inserted.
2. Fill syringe with appropriate amount of article to be dosed.
3. Restrain rat (Refer to Restraint Technique II).
4. Place tip of needle in the rear of the rat’s mouth to induce
swallowing, while gently pressing the shaft of the needle against
the roof of the mouth to extend the neck and align the mouth and
esophagus.
5. Slide tip down back of mouth, moving tip forward in one fluid
motion.
6. Take your time, any resistance felt indicates improper placement.
Needle should slide down into esophagus easily. A violent
reaction (coughing, gasping) usually follows accidental
introduction of the tube into the larynx or trachea.
7. Once the needle is properly placed, administer the article.
*Note: This technique has been largely replaced with less invasive
blood collection techniques such as from the lateral saphenous vein.
Procedures:
Materials: +/- Anesthetic, Disposable gloves, Hypodermic needle (20-22 gauge), Gauze,
Electric clippers, #40 blade, Hematocrit tube or Microvette, petrolatum-based lubricant
(can be applied to the puncture site to make blood bead for easier collection)
Procedures:
Procedures:
5. Alternatively, the procedure may be performed with the rat lying on its right side. In
this case the needle is inserted just behind the forelimb where the heartbeat is easily
felt. The location of the heart is approximately under the elbow when leg is placed on
a normal anatomic position.
6. This procedure must be followed by euthanasia as it is only permissible as a
terminal procedure unless it is scientifically justified and approved in the
IACUC protocol.
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Procedures:
1. Anesthetize rat.
2. With the rat in dorsal recumbency (lying on its back), prep axillary (armpit) area with
alcohol swab.
3. Cut axillary region with scissors or a scalpel blade to expose the subclavian artery and
vein which are deep in the armpit.
4. Cut the subclavian artery and vein with the scissors or a scalpel blade.
5. Collect the blood sample with the syringe (no needle) as the blood pools in the
axillary region. This is a terminal procedure.
The following figure displays a practical method of creating a tourniquet for blood
collection from the lateral saphenous, dorsal metatarsal, tail vein, or to prepare the tail for
injection into the tail vein.
A rubber band is placed and secured with a hemostat proximal to the site of blood
collection or injection.
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There are generally two methods of anesthetic delivery to rodents, parenteral and inhalation.
B. Inhalation anesthesia involves the delivery of volatile anesthetic agents to the patient via
the respiratory tract.
The best method for the delivery of volatile agents to rodents involves the use of a precision
vaporizer and an anesthesia chamber alone or in combination with a face mask appropriately
sized for rodents. LARC has the equipment to safely and effectively administer inhalant
anesthetics (isoflurane) to rodents using a precision vaporizer. Please contact LARC for
details regarding use of this equipment. The rodent is placed within the chamber for induction.
Once anesthetized, the animal is removed from the chamber with anesthesia maintained by
delivery through a face mask. Both chamber and mask delivery incorporate the use of a precision
vaporizer for precise control of the concentration of anesthetic gas delivered to the patient.
Because oxygen flow is required to volatilize the liquid anesthetic placed within the vaporizer,
oxygen is also delivered to the patient and helps to maintain the blood oxygen saturation.
Because fairly high fresh gas flows are required for either chamber or mask delivery, adequate
scavenging of waste anesthetic gases is necessary to avoid exposure to personnel. In general,
isoflurane anesthesia is superior to injectable anesthesia. Animals are more quickly induced and
recovered, and close to 100% of the gas is eliminated through the lungs without being
metabolized, (<1% of isoflurane is metabolized). This allows for greater control of the
anesthetic depth and tends to minimize experimental variables.
of chamber capacity. This can be done by applying the gas in liquid phase from its bottle
to a cotton ball below the false floor of the container. For small containers, a piece of
cotton can be enclosed in a histology tissue cassette and the agent may be poured or
applied onto the cotton in the cassette. Use of 0.2 ml liquid agent per 1000 ml chamber
volume will give about a 4% concentration of gas. In the experience of the veterinary
staff at Emory University, using nine naïve ICR mice (5 males & 4 females; 2 months of
age) introduced to the chamber sequentially after the introduction of isoflurane (0.2 ml/L
chamber volume), recumbency was obtained in 57 +/- 21 seconds. However, for rapid
and effective induction, the agent had to be replenished in the chamber approximately
every 3 mice. Gas delivered by this method must be done under a chemical fume hood or
type IIB Biosafety cabinets that are vented to the outside.
0.1 ml 2%
0.2 ml 4%
0.3 ml 6%
Parameters that can be used to assess the depth of anesthesia in rodents include:
In most instances, cardiovascular and respiratory assessments are limited to observations of chest
wall movement to determine respiratory rate and palpation of the apical pulse through the chest
wall.
Because the ratio of body surface area to body mass is greater in rodents than in larger species,
thermal support is critical to the successful recovery of rodents from anesthesia. Body heat may
be dissipated from the tail, soles of the feet and ears with a resultant profound decline in the core
and surface body temperature. This hypothermia may, in turn, lead to a decline in both anesthetic
metabolism and any urinary excretion of the anesthetic agent.
Methods to minimize heat loss to the environment during anesthesia of rodents include
increasing the ambient temperature of the operating room; placement of a thermal blanket (e.g.
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recirculating warm water blanket) or drape between the animal and the stainless steel operating
table; use of heat lamps (carefully placed!); minimization of organ exposure from body cavities
during surgery; recovery of the animal on a warming blanket or within a temperature-supported
cage; administration of warmed subcutaneous or intraperitoneal fluids before, during or after the
anesthetic episode; housing on bedding during recovery to provide thermal insulation; and
recovery with cage mates to permit animals to huddle together and thus provide
thermoregulation. Do not place an unconscious rat in a cage with an awake rat as the alert rat
will tend to mutilate the anesthetized rat.
Rodents have high energy requirements due to their small size and high metabolic rate, yet they
have minimal fat reservoirs which can be mobilized to supply needed energy (more so in mice).
Nutritional support is critical upon recovery to avoid hypoglycemia. Nutritional support can be
provided by simply providing a high-quality pelleted rodent diet as soon as the animal has
recovered sufficiently to ambulate and eat (remember - rodents do not vomit so pre-anesthetic
fasting is not typically performed).
Because rodents are frequently anesthetized with injectable agents that inhibit blinking (e.g.,
ketamine), ocular lubrication is important to protect against corneal ulceration.
Ketamine 80-90
mg/kg IP, IM Surgical anesthesia
Xylazine 8-10
Ketamine 75 mg/kg Moderate surgical anesthesia. Not for major
IP
Medetomidine 0.5 mg/kg surgery
IM = intramuscular
IP = intraperitoneal
SQ or SC = subcutaneous
IV = intravenous
PO = orally
Induction Maintenance
Isoflurane (Aerrane®, Isoflo®) Up to 5% 1 -3%
When using isoflurane in a calibrated vaporizer, an oxygen flow rate of 1 liter/minute should be
used in conjunction with a non-rebreathing system.
For Guidelines for Evaluating and Treating Postoperative Pain in Mice and Rats (GDLARC001)
please visit the LARC website (http://vpr.utsa.edu/larc.php).
2. NSAIDs must be used with caution beyond 3 days as it may have deleterious
effect on the gastrointestinal mucosa. This may be especially true when using
ketoprofen and flunixin.
Local anesthesia/analgesia
Preoperative (preferred) or intraoperative infiltration of the incision site and underlying tissues
with 1-2% lidocaine/0.25-0.5% bupivacaine (50/50 mix by volume) is an effective local
anesthesia cocktail to block surgical pain from the offset and for up to 6 hours. Lidocaine
provides immediate pain control, while bupivacaine provides longer pain control.
EUTHANASIA
Proper euthanasia technique includes a follow-up exam to confirm death or the absence of a
heartbeat. Monitoring respiration is not considered sufficient since with some euthanasia
techniques heartbeat may be maintained after visible respiration has ceased.
The need to minimize fear and apprehension must be considered in determining the method of
euthanasia. Distress vocalizations, fearful behavior, and release of certain odors or pheromones
by a frightened animal may cause anxiety and apprehension in other animals. Therefore,
whenever possible, animals should not be exposed to euthanasia of others.
The euthanasia methods listed in table below are consistent with the American Veterinary
Medical Association (AVMA) Panel on Euthanasia, 2007.
*Carbon dioxide (CO2), when used properly, is classified by the 2007 Report of the American
Veterinary Medical Association Panel on Euthanasia as a safe method of euthanasia for many
small laboratory animals. CO2 has many advantages including: (1) rapid depressant, analgesic,
and anesthetic effects; (2) easy availability in compressed gas cylinders; and (3) inexpensive,
nonflammable, nonexplosive, and poses minimal hazard to personnel when used with properly
designed equipment.
Although CO2 is generally considered an acceptable form of euthanasia for small laboratory
animals when properly administered, its acceptability is predicated on the following:
The euthanasia chamber should not be prefilled with CO2, since high concentrations (>70%) can
cause nasal irritation, discomfort, and excitability. Rather, the animals should first be placed into
the chamber, followed by the addition of CO2 at a low flow rate (e.g. a rate sufficient to displace
approximately 20% of the chamber volume per minute) to complete the process. In general the
low flow rate can be assessed if a very low hissing sound is heard as the chamber is filled with
CO2. Rapid gas flows should be avoided since excessive noises (“winds”) can develop and
induce excitement and distress in the animals. In addition, exposure to high CO2 concentrations
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is painful as the CO2 mixes with moisture in the nasal passages to form carbonic acid. Gas flow
should be maintained for at least 2 minutes after apparent clinical death (e.g. at least one minute
after the animal has quit breathing). Unintended recovery must be obviated by the use of
appropriate CO2 concentrations and exposure times, and followed by a physical method such as
cervical dislocation (in <200-gram rats), bilateral thoracotomy, exsanguination or decapitation.
According to the 2007 Report of the AVMA Panel on Euthanasia, ‘Compressed CO2 gas in
cylinders is the only recommended source of carbon dioxide because the inflow to the chamber
can be regulated precisely. CO2 generated by other methods such as from dry ice, fire
extinguishers, or chemical means (e.g. antacids) is unacceptable.” Only one species at a time
should be placed into a chamber, and the chamber must not be overcrowded. When placed into
the chamber, all animals must have floor space. Euthanasia should always be done in cohorts
(live animals should not be placed in the chamber with dead animals). Chambers should be kept
clean to minimize odors that might distress animals prior to euthanasia. Animals must not be
euthanized in animal housing rooms, except under special circumstances such as during
quarantine for infectious disease agents.
Because of the heavy muscle and bone mass in the neck region, cervical dislocation should not
be done in > 200 gram rats.
Neonates: Since the time period for euthanasia is substantially prolonged in neonatal animals due
to their inherent resistance to hypoxia, CO2 narcosis is generally not recommended. Other
methods (see table 2) should be used. The IACUC policy on euthanasia
(http://vpr.utsa.edu/oric/iacuc/programpolicies.php) provides further instruction on the
euthanasia of the rodent fetus and newborn.