Fabio Cunial

cdawg suffix tree maximal repeat burrows-wheeler transform repetitive strings bwt maximal repeats matching statistics bidirectional index straight-line program count query locate query minimal absent words contraction string depth wavelet tree suffix tree topology probabilistic suffix trie string kernel k-mer minimal absent word markov correction context-free grammar heavy path decomposition bwt runs suffix-link tree transposons local alignments clustering repeats de novo genome assembly run-length encoded bwt right-maximal matching statistics alignment-free protein classification ppm escape probability variable-order markov model infinite-order de bruijn graph variable-order de bruijn graph repetitive string parent operation weiner link long reads pacbio reads rlbwt lz77