Samuel Lampa

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semantic web bioinformatics golang sparql scientific workflows rdf semantic mediawiki programming flow-based programming science reproducibility prolog data science data analysis bioclipse linked data computational biology erlang elixirlang elixir smw smwcon php eclipse galaxy rich client platform research data query systems software development provenance nmrshiftdb commandline research markdown documentation containers git devops docker ansible vagrant workflows python luigi github big data refcard cheat sheet irods biology go

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Samuel Lampa

Presentations

2nd Proj. Update: Integrating SWI-Prolog for Semantic Reasoning in Bioclipse

3rd Proj. Update: Integrating SWI-Prolog for Semantic Reasoning in Bioclipse

Thesis presentation Samuel Lampa

Hooking up Semantic MediaWiki with external tools via SPARQL

My lightning talk at Go Stockholm meetup Aug 6th 2013

The RDFIO Extension - A Status update

Python Generators - Talk at PySthlm meetup #15

Flow based programming an overview

Profiling go code a beginners tutorial

First encounter with Elixir - Some random things

AddisDev Meetup ii: Golang and Flow-based Programming

iRODS Rule Language Cheat Sheet

Vagrant, Ansible and Docker - How they fit together for productive flexible development environments

SciPipe - A light-weight workflow library inspired by flow-based programming

Batch import of large RDF datasets into Semantic MediaWiki

Reproducibility in Scientific Data Analysis - BioScience Seminar

How to document computational research projects

Linked Data for improved organization of research data

Using Flow-based programming to write tools and workflows for Scientific Computing in Go

SciCommander - Provenance reports for outputs of ad-hoc analyses

Likes

Overview of ZeroMQ

So I have an SD File … What do I do next?

Scalable and reproducible workflows with Pachyderm

The Empirical Turn in Knowledge Representation

Advances in Scientific Workflow Environments

Lab Service Wiki: a wiki-based data management solution for laboratories production services

Reproducible bioinformatics pipelines with Docker and Anduril

SMWCon Fall 2015 FForms

PSUG #52 Dataflow and simplified reactive programming with Akka-streams

Why is Bioinformatics a Good Fit for Spark?

EP-SPARQL: A Unified Language for Event Processing and Stream Reasoning