1
HARAR HEALTH SCIENSE COLLEGE
Department of Pharmacy
Course Title: Immunological and Biological Products
3. Immunological products and biological products
3.3 Nucleic acid based biological
products
For 3rd
Year B.pharm Student
By:-MENBERE DEBELE
(BSc.in C/Nurse & B.Pharm)
2
Out lines
 Gene therapy
 Antisense therapy
 Aptamer technology
Nucleic acid based biological products
3
Learning objectives:- At the end of this unit, you will
be able to
 Describe the concepts, types and therapeutic
applications of
 Nucleic acid based biological products
(Gene therapy, Antisense therapy &
Aptamer technology )
4
Nucleic acid based biological products
 Current developments in nucleic-acid-based
therapeutics center around gene therapy, as well
as antisense and aptamer technology.
 These technologies have the potential to
revolutionize medical practice.
5
Gene based products
Gene therapy
 Gene therapy is the unique technique that uses
gene to prevent or recover any diseases.
 Approaches to gene therapy, includes:
i) replacing a mutated gene that causes disease
with a healthy gene;
ii) ‘knocking out’ or inactivating, a mutated
gene that is functioning improperly; and
iii) introducing new genes into the cells to protect
from any diseases.
6
Cont. . .
 The principle
 stable introduction of a gene into the genetic
complement of a cell, such that subsequent
expression of the gene achieves a therapeutic
goal.
 The potential of gene therapy
 as a curative approach for inborn errors of
metabolism and
 other conditions induced by the presence of a
defective copy of a specific gene (or genes) is
understandable.
7
Cont. . .
Table: Some diseases for which gene-based
therapeutic approaches are currently being
appraised in clinical trials
8
Cont. . .
 Indeed two-thirds of all gene therapy trials
conducted to date aim to treat cancer.
 The first such trial was initiated in the USA in
1989.
 Moreover, gene therapy, like all other medical
interventions, is not without associated risk,
serious adverse effects including some fatalities.
 As a result, regulation and monitoring of gene
therapy trials has been increased.
9
Cont. . .
Basic approach to gene therapy
 The desired gene must usually be packaged into
a vector system
 capable of delivering it safely inside the
intended recipient cells.
 A variety of vectors can be used to effect gene
transfer.
10
 These include both
 viruses (particularly retroviruses and
adenoviruses) and
 non-viral carriers, such as plasmid-containing
liposomes/ lipoplexes.
 Once integrated by the cell, the exogenous
nucleic acid must now travel/be delivered to
the nucleus.
11
Cont. . .
 Gene therapy protocols may need one of three
different strategies.
A. In vitro gene therapy entails removal of target cells
from the body followed by their incubation with
nucleic acid-containing vector.
- After the vector delivers the nucleic acid into the
human cells, they are placed back in the body.
12
Cont. . .
B, In situ gene therapy entails direct injection of the
vector immediately adjacent to the body target
cells.
C, In vivo gene therapy involves IV administration of
the vector.
• The vector has been designed such that it will only
recognize and bind the intended target cells.
• In this way, the nucleic acid is delivered exclusively to
those cells.
13
Figure: The various practical approaches that may be
pursued when undertaking gene therapy.
14
Cont. . .
 The in vitro approach entails
 initial removal of the target cells from the body.
 then cultured in vitro and incubated with
vector containing the nucleic acid to be
delivered.
 genetically altered cells are then reintroduced
into the patient’s body.
 the most commonly adopted protocol to date.
15
 In order to be successful, the target cells must be
relatively easy to remove from the body, and
reintroduce into the body.
 Such in vitro approaches have successfully been
undertaken utilizing various body cell types,
 including blood cells, stem cells, epithelial
cells, muscle cells and hepatocytes.
16
Cont. . .
 A second approach involves
 direct injection/administration of the nucleic-
acid-containing vector to the target cell, in situ
in the body.
 Examples of this approach have included the
direct injection of vectors into a tumour mass,
as well as aerosol administration of vectors
(e.g. containing the cystic fibrosis gene) to
respiratory tract epithelial cells.
17
 Although less complicated than the in vitro
approach,
 direct in situ injection of vector into the
immediate vicinity of target cells is not always
feasible.
 This would be true, for example, if the target
cells are not localized to one specific area
of the body (e.g. blood cells).
18
Cont. . .
 An alternative (in vivo) approach entails
 the development of vectors capable of
recognizing and binding only to specific,
predefined cell types.
 Such vectors could then be administered easily by,
for example, i.v. injection.
19
Cont. . .
Vectors used in gene therapy
 Vectors are conveniently categorized as
 being
 viral-based or
 non-viral-based systems.
20
Gene therapy. . .
 Gene therapy represents a seemingly
straightforward therapeutic option that could
correct genetic-based diseases.
 This would be achieved simply by facilitating
insertion of a ‘healthy’ copy of the gene in
question into appropriate cells of the subject.
 Although simple in concept, the application of
gene therapy to treat/cure genetic diseases has,
thus far, made little impact in practice.
21
Cont. . .
 To date, the majority of gene therapy trials
undertaken aim to cure not inherited genetic
defects, but cancer.
 Initial gene therapy trials aimed at treating/curing
cancer began in 1991.
 Various strategic approaches have since been
developed in this regard.
 Numerous trials aimed at assessing the application
of gene therapy for the treatment of a wide
variety of cancer types are now underway.
22
Cont. . .
 Table: Some specific cancer types for which
human gene therapy trials have been initiated
23
Antisense technology
 Different disease states are associated with the
inappropriate production/overproduction of
gene products.
 Examples include:
 the expression of oncogenes, leading to the
transformed state;
 the overexpression of cytokines during some
disease states with associated worsening of
disease symptoms;
 The overproduction of angiotensinogen, -
which ultimately results in hypertension.
24
Cont. . .
 An additional example includes
 the intracellular transcription and translation
of virally encode genes during intracellular
viral replication.
 In all such instances, the medical consequences of
such inappropriate gene (over)expression
 could be prevented if this expression could be
downregulated.
 A nucleic-acid-based approach to achieve just
this is termed ‘antisense technology’.
25
Cont. . .
 The antisense approach is based upon the
generation of
 short, single-stranded stretches of nucleic
acids (which can be DNA- or RNA-based)
displaying a specific nucleotide sequence.
 These are generally termed ‘antisense
oligonucleotides’.
 are capable of binding to DNA (at specific
gene sites) or, more commonly, to mRNA
derived from specific genes.
26
This binding occurs via nucleotide base pair
complementarity.
 Binding prevents expression of the
gene product by
 preventing either the
transcription or translation
process.
 The end goal is the prevention of expression of a
particular gene product (invariably a protein) by
either blocking the transcription or translation
of that gene
27
Cont. .
Figure: Overview of the concept of the antisense
approach:
28
Cont. . .
Antisense oligonucleotides
 The nucleotide sequence of an mRNA molecule
contains the encoded blueprint that
 dictates the amino acid sequence of a protein.
 Because of this, the mRNA sequence is said to
make ‘sense’.
 This mRNA, therefore, is complementary to an
‘antisense’ DNA strand,
 i.e. it is the antisense strand of DNA in a given
gene that serves as template for the mRNA
synthesis.
29
Cont. . .
 As long as at least part of the nucleotide
sequences of any mRNA is known,
 it becomes potentially possible to synthesize
chemically an oligonucleotide, either a ribo- or
deoxyribo-nucleotide,
 whose base sequence is complementary to at
least a section of the mRNA sequence.
 Binding results in the blocking of translation of
the mRNA and, hence, prevents synthesis of the
mature gene’s protein product.
30
Cont. . .
 The prevention of mRNA translation by duplex
formation with antisense oligonucleotides
appears to be underpinned by various mechanisms,
including:
A. the oligonucleotides act as steric blockers, i.e.
prevent proteins involved in translation, or
other aspects of mRNA processing,
 from binding to appropriate sequences in the
mRNA;
31
B . the generation of duplexes also likely allows
targeting by intracellular Ribonuclease (RNases).
 This enzyme is capable of binding to RNA–
DNA duplexes and degrading the RNA
portion of the duplex
 (most synthetic antisense oligonucleotides are
DNA based).
32
Uses, Advantages and disadvantages of ‘oligos’
Uses
 Antisense oligonucleotides (oligos) are being
assessed in
 preclinical and clinical studies as therapeutic
agents in the treatment of cancer, as well as a
variety of viral diseases
 e.g. HIV, hepatitis B, herpes and
papillomavirus infections, rheumatoid
arthritis and allergic disorders.
 Cancer, however, remains the most common
target indication.
33
Cont. . .
 Advantages
 specificity.
 Relatively low toxicity
 The requirement for only low levels of the oligo
to be present inside the cell, as target mRNA is,
itself, usually present only in nanomolar
concentrations.
 The ability to manufacture oligos of specified
nucleotide sequence is relatively straightforward
using automated synthesizers.
34
Cont. . .
 Disadvantages
 sensitivity to nucleases;
 very low serum half lives;
 poor rate of cellular uptake;
 orally inactive
35
Aptamer technology
 Aptamers are single-stranded DNA or RNA-based
sequences that fold up
 to adopt a unique three dimensional structure,
allowing them to bind a specific target
molecule.
 Binding displays high specificity, and aptamers
capable of
 distinguishing between closely related
isoforms or different conformational states of
the same protein have been generated.
 Binding affinity is also high.
36
Cont. . .
 It is in the low nanomolar to picomolar range,
which is comparable to the binding affinity of an
antibody for the antigen against which it was
raised.
 Aptamer technology was first developed in 1990.
 It entails the initial generation of a large aptamer
library,
 with subsequent identification of individual
aptamers binding a target ligand via an
appropriate selection strategy.
37
Cont. . .
 Identification of specific aptamers binding the
target molecule is
 most easily undertaken by an automated in
vitro selection approach
 known as systematic evolution of ligands by
exponential enrichment (SELEX).
 Most libraries contain up to 1015
species.
38
 Because of their high binding specificity and
affinity, aptamers (like antibodies)
 are/may prove useful for
 affinity-based purification, target validation
and drug discovery, diagnostics and
therapeutics.
39
Cont. . .
 One such product (Macugen) has been approved
for general medical use to date.
 A modest number of additional aptamers are in
clinical trials,
 aimed at treating conditions including infectious
diseases, cancer and haemophilia.
40
Cont. . .
 Aptamers appear to display
 low immunogenicity;
 but, when administered systemically, they
are quickly excreted via size-mediated renal
clearance.
 In order to prevent renal removal, such aptamers
are usually conjugated to PEG.
41
PEG may also help further protect the aptamers
from
 degradation by serum nucleases;
 native aptamers are prone to nuclease
attack, but their half-lives can most
effectively be extended via chemical
modification.
42

3.4 Nucleic acid based Bio Product .pptx

  • 1.
    1 HARAR HEALTH SCIENSECOLLEGE Department of Pharmacy Course Title: Immunological and Biological Products 3. Immunological products and biological products 3.3 Nucleic acid based biological products For 3rd Year B.pharm Student By:-MENBERE DEBELE (BSc.in C/Nurse & B.Pharm)
  • 2.
    2 Out lines  Genetherapy  Antisense therapy  Aptamer technology Nucleic acid based biological products
  • 3.
    3 Learning objectives:- Atthe end of this unit, you will be able to  Describe the concepts, types and therapeutic applications of  Nucleic acid based biological products (Gene therapy, Antisense therapy & Aptamer technology )
  • 4.
    4 Nucleic acid basedbiological products  Current developments in nucleic-acid-based therapeutics center around gene therapy, as well as antisense and aptamer technology.  These technologies have the potential to revolutionize medical practice.
  • 5.
    5 Gene based products Genetherapy  Gene therapy is the unique technique that uses gene to prevent or recover any diseases.  Approaches to gene therapy, includes: i) replacing a mutated gene that causes disease with a healthy gene; ii) ‘knocking out’ or inactivating, a mutated gene that is functioning improperly; and iii) introducing new genes into the cells to protect from any diseases.
  • 6.
    6 Cont. . . The principle  stable introduction of a gene into the genetic complement of a cell, such that subsequent expression of the gene achieves a therapeutic goal.  The potential of gene therapy  as a curative approach for inborn errors of metabolism and  other conditions induced by the presence of a defective copy of a specific gene (or genes) is understandable.
  • 7.
    7 Cont. . . Table:Some diseases for which gene-based therapeutic approaches are currently being appraised in clinical trials
  • 8.
    8 Cont. . . Indeed two-thirds of all gene therapy trials conducted to date aim to treat cancer.  The first such trial was initiated in the USA in 1989.  Moreover, gene therapy, like all other medical interventions, is not without associated risk, serious adverse effects including some fatalities.  As a result, regulation and monitoring of gene therapy trials has been increased.
  • 9.
    9 Cont. . . Basicapproach to gene therapy  The desired gene must usually be packaged into a vector system  capable of delivering it safely inside the intended recipient cells.  A variety of vectors can be used to effect gene transfer.
  • 10.
    10  These includeboth  viruses (particularly retroviruses and adenoviruses) and  non-viral carriers, such as plasmid-containing liposomes/ lipoplexes.  Once integrated by the cell, the exogenous nucleic acid must now travel/be delivered to the nucleus.
  • 11.
    11 Cont. . . Gene therapy protocols may need one of three different strategies. A. In vitro gene therapy entails removal of target cells from the body followed by their incubation with nucleic acid-containing vector. - After the vector delivers the nucleic acid into the human cells, they are placed back in the body.
  • 12.
    12 Cont. . . B,In situ gene therapy entails direct injection of the vector immediately adjacent to the body target cells. C, In vivo gene therapy involves IV administration of the vector. • The vector has been designed such that it will only recognize and bind the intended target cells. • In this way, the nucleic acid is delivered exclusively to those cells.
  • 13.
    13 Figure: The variouspractical approaches that may be pursued when undertaking gene therapy.
  • 14.
    14 Cont. . . The in vitro approach entails  initial removal of the target cells from the body.  then cultured in vitro and incubated with vector containing the nucleic acid to be delivered.  genetically altered cells are then reintroduced into the patient’s body.  the most commonly adopted protocol to date.
  • 15.
    15  In orderto be successful, the target cells must be relatively easy to remove from the body, and reintroduce into the body.  Such in vitro approaches have successfully been undertaken utilizing various body cell types,  including blood cells, stem cells, epithelial cells, muscle cells and hepatocytes.
  • 16.
    16 Cont. . . A second approach involves  direct injection/administration of the nucleic- acid-containing vector to the target cell, in situ in the body.  Examples of this approach have included the direct injection of vectors into a tumour mass, as well as aerosol administration of vectors (e.g. containing the cystic fibrosis gene) to respiratory tract epithelial cells.
  • 17.
    17  Although lesscomplicated than the in vitro approach,  direct in situ injection of vector into the immediate vicinity of target cells is not always feasible.  This would be true, for example, if the target cells are not localized to one specific area of the body (e.g. blood cells).
  • 18.
    18 Cont. . . An alternative (in vivo) approach entails  the development of vectors capable of recognizing and binding only to specific, predefined cell types.  Such vectors could then be administered easily by, for example, i.v. injection.
  • 19.
    19 Cont. . . Vectorsused in gene therapy  Vectors are conveniently categorized as  being  viral-based or  non-viral-based systems.
  • 20.
    20 Gene therapy. ..  Gene therapy represents a seemingly straightforward therapeutic option that could correct genetic-based diseases.  This would be achieved simply by facilitating insertion of a ‘healthy’ copy of the gene in question into appropriate cells of the subject.  Although simple in concept, the application of gene therapy to treat/cure genetic diseases has, thus far, made little impact in practice.
  • 21.
    21 Cont. . . To date, the majority of gene therapy trials undertaken aim to cure not inherited genetic defects, but cancer.  Initial gene therapy trials aimed at treating/curing cancer began in 1991.  Various strategic approaches have since been developed in this regard.  Numerous trials aimed at assessing the application of gene therapy for the treatment of a wide variety of cancer types are now underway.
  • 22.
    22 Cont. . . Table: Some specific cancer types for which human gene therapy trials have been initiated
  • 23.
    23 Antisense technology  Differentdisease states are associated with the inappropriate production/overproduction of gene products.  Examples include:  the expression of oncogenes, leading to the transformed state;  the overexpression of cytokines during some disease states with associated worsening of disease symptoms;  The overproduction of angiotensinogen, - which ultimately results in hypertension.
  • 24.
    24 Cont. . . An additional example includes  the intracellular transcription and translation of virally encode genes during intracellular viral replication.  In all such instances, the medical consequences of such inappropriate gene (over)expression  could be prevented if this expression could be downregulated.  A nucleic-acid-based approach to achieve just this is termed ‘antisense technology’.
  • 25.
    25 Cont. . . The antisense approach is based upon the generation of  short, single-stranded stretches of nucleic acids (which can be DNA- or RNA-based) displaying a specific nucleotide sequence.  These are generally termed ‘antisense oligonucleotides’.  are capable of binding to DNA (at specific gene sites) or, more commonly, to mRNA derived from specific genes.
  • 26.
    26 This binding occursvia nucleotide base pair complementarity.  Binding prevents expression of the gene product by  preventing either the transcription or translation process.  The end goal is the prevention of expression of a particular gene product (invariably a protein) by either blocking the transcription or translation of that gene
  • 27.
    27 Cont. . Figure: Overviewof the concept of the antisense approach:
  • 28.
    28 Cont. . . Antisenseoligonucleotides  The nucleotide sequence of an mRNA molecule contains the encoded blueprint that  dictates the amino acid sequence of a protein.  Because of this, the mRNA sequence is said to make ‘sense’.  This mRNA, therefore, is complementary to an ‘antisense’ DNA strand,  i.e. it is the antisense strand of DNA in a given gene that serves as template for the mRNA synthesis.
  • 29.
    29 Cont. . . As long as at least part of the nucleotide sequences of any mRNA is known,  it becomes potentially possible to synthesize chemically an oligonucleotide, either a ribo- or deoxyribo-nucleotide,  whose base sequence is complementary to at least a section of the mRNA sequence.  Binding results in the blocking of translation of the mRNA and, hence, prevents synthesis of the mature gene’s protein product.
  • 30.
    30 Cont. . . The prevention of mRNA translation by duplex formation with antisense oligonucleotides appears to be underpinned by various mechanisms, including: A. the oligonucleotides act as steric blockers, i.e. prevent proteins involved in translation, or other aspects of mRNA processing,  from binding to appropriate sequences in the mRNA;
  • 31.
    31 B . thegeneration of duplexes also likely allows targeting by intracellular Ribonuclease (RNases).  This enzyme is capable of binding to RNA– DNA duplexes and degrading the RNA portion of the duplex  (most synthetic antisense oligonucleotides are DNA based).
  • 32.
    32 Uses, Advantages anddisadvantages of ‘oligos’ Uses  Antisense oligonucleotides (oligos) are being assessed in  preclinical and clinical studies as therapeutic agents in the treatment of cancer, as well as a variety of viral diseases  e.g. HIV, hepatitis B, herpes and papillomavirus infections, rheumatoid arthritis and allergic disorders.  Cancer, however, remains the most common target indication.
  • 33.
    33 Cont. . . Advantages  specificity.  Relatively low toxicity  The requirement for only low levels of the oligo to be present inside the cell, as target mRNA is, itself, usually present only in nanomolar concentrations.  The ability to manufacture oligos of specified nucleotide sequence is relatively straightforward using automated synthesizers.
  • 34.
    34 Cont. . . Disadvantages  sensitivity to nucleases;  very low serum half lives;  poor rate of cellular uptake;  orally inactive
  • 35.
    35 Aptamer technology  Aptamersare single-stranded DNA or RNA-based sequences that fold up  to adopt a unique three dimensional structure, allowing them to bind a specific target molecule.  Binding displays high specificity, and aptamers capable of  distinguishing between closely related isoforms or different conformational states of the same protein have been generated.  Binding affinity is also high.
  • 36.
    36 Cont. . . It is in the low nanomolar to picomolar range, which is comparable to the binding affinity of an antibody for the antigen against which it was raised.  Aptamer technology was first developed in 1990.  It entails the initial generation of a large aptamer library,  with subsequent identification of individual aptamers binding a target ligand via an appropriate selection strategy.
  • 37.
    37 Cont. . . Identification of specific aptamers binding the target molecule is  most easily undertaken by an automated in vitro selection approach  known as systematic evolution of ligands by exponential enrichment (SELEX).  Most libraries contain up to 1015 species.
  • 38.
    38  Because oftheir high binding specificity and affinity, aptamers (like antibodies)  are/may prove useful for  affinity-based purification, target validation and drug discovery, diagnostics and therapeutics.
  • 39.
    39 Cont. . . One such product (Macugen) has been approved for general medical use to date.  A modest number of additional aptamers are in clinical trials,  aimed at treating conditions including infectious diseases, cancer and haemophilia.
  • 40.
    40 Cont. . . Aptamers appear to display  low immunogenicity;  but, when administered systemically, they are quickly excreted via size-mediated renal clearance.  In order to prevent renal removal, such aptamers are usually conjugated to PEG.
  • 41.
    41 PEG may alsohelp further protect the aptamers from  degradation by serum nucleases;  native aptamers are prone to nuclease attack, but their half-lives can most effectively be extended via chemical modification.
  • 42.

Editor's Notes

  • #7 Chronic granulomatous disease (CGD)
  • #36 DNA aptamer libraries are usually generated via direct chemical synthesis and amplified by PCR.
  • #37 RNA libraries are usually generated by in vitro transcription of synthetic DNA libraries.