Antibiotic resistance in Bacteria


              MBBS/BDS 1st year
                27.10.2010
Antibiotic resistance in bacteria
 Emergence of antibiotic resistance is a major factor
  limiting long term successful use of an antimicrobial
  agent.

 Antibiotic resistance is a type of drug resistance where a
  microorganism is able to survive exposure to an antibiotic.

 Resistant organism: One that will not be inhibited or killed
  by an antibacterial agent at concentrations of the drug
  achievable in the body after normal dosage.

 If a bacterium carries several resistance genes, it is called
  multiresistant or, informally, a superbug or super bacteria.
Factors contributing for resistance
 Misuse of antibiotics
< Use of antibiotics with no clinical indication (e.g, for viral
  infections)
< Use of broad spectrum antibiotics when not indicated
< Inappropriate choice of empiric antibiotics

 Overuse of antibiotics

 Addition of antibiotic to the feed of livestock

 Failure to follow infection control practices
Settings that Foster Drug Resistance

    Community
<     Day-care centers

<     Long term care facilities

<     Homeless shelters

<     Jails
Settings that Foster Drug Resistance

 Hospital
<    Intensive care units
<     Oncology units
<     Dialysis units
<     Rehab units
<     Transplant units
<     Burn units
Antibiotic resistance in bacteria
 Two types:
  Intrinsic:
      Naturally occuring trait
      Species or genus specific

  Acquired:
      Acquired resistance implies that a susceptible organism has
       developed resistance to an agent to which it was previously
       susceptible, and can occur in two general ways: by mutation
       (s) in the existing DNA of the organims or by acquisition of
       new DNA.

      Present in only certain strains of a species or of a genus
Genetics of Resistance
Mutational resistance:
   A single chromosomal mutation may result in the
    synthesis of an altered protein: for example,
    streptomycin resistance via alteration in a ribosomal
    protein, or the single aminoacid change in the enzyme
    dihydtropteroate synthetase resulting in a lowered
    affinity for sulfonamides

   A series of mutations, for example, changes in
    penicillin binding proteins (PBPs) in penicillin resistant
    pneumococci
Genetics of Resistance
 Resistance by acquisition of new DNA
  – By Transformation
  – Conjugation
  – Transduction

Nature of elements involved in transferring DNA:
      Plasmids: plasmid mediated resistance much more efficient
       than the resistance ass. with chromosomal mutation

      Transposons
Mechanism of action of antibiotics
DNA gyrase        DNA-directed
                                                            RNA polymerase
                                          Quinolones
 Cell wall synthesis                                        Rifampin
 ß-lactams &
 Glycopeptides
 (Vancomycin)                             DNA
                                   THFA        mRNA
Trimethoprim                                                     Protein
                                          Ribosomes              synthesis
Folic acid                                                       inhibition
synthesis                      DHFA       50    50     50
                                          30    30     30        Macrolides &
                                                                 Lincomycins
Sulfonamides
             PABA
                                                            Protein synthesis
                        Protein synthesis                   inhibition
                        mistranslation                      Tetracyclines
                        Aminoglycosides
   Cohen. Science 1992; 257:1064
Mechanisms of antibiotic resistance : how DO
          the bacteria do it ??
Mechanisms of resistance (Contd.)
2. Alteration of Access to the target site (altered uptake or increased exit)
   Involves decreasing the amt of drug that reaches the target by either:
     Altering entry, for example, by decreasing the permeability of the cell wall,
     Pumping the drug out of the cell (known as efflux mechanisms)

3. Enzymatic inactivation:

    Enzymes that modify or destroy the antibacterial agent may be produced
    (drug inactivation)
e.g.,
    Beta lactamases
    Aminoglycoside modifying enzymes
    Chloramphenicol acetyl transferase

4. Bypass of an antibiotic sensitive steps
Mechanisms of resistance:
  Resistance mechanisms           can    be    broadly
  classified into 4 types:

1. Alteration of the target site
  – The target site may be altered so that it has a
    lowered affinity for the antibacterial (antibiotic),
    but still functions adequately for nomal
    metabolism to proceed. Alternatively, an
    additional target (e.g enzyme) may be
    synthesized.
Mechanism of resistance to particular
 antibiotics
Resistance to β -lactams:

 Resistance due to β -lactamases: most prevalent

 Alteration in the pre-existing penicillin binding proteins
  (PBPs)

 Acquisition of a novel PBP insensitive to beta β –
  lactams: e.g, methicillin resistance in Staphylococcus
  aureus (MRSA)

 Changes in the outer membrane proteins of Gram
  negative organisms that prevent these compounds
  from reaching their targets
Aminoglycoside Resistance:

Intrinsic and acquired resistance due to decreased
 uptake

Acquired resistance is frequently due to plasmid
 encoded modifying enzymes:
      Three classes of aminoglycoside modifying enzymes:
       Acetyltransferases,
       Adenyltransferases and
       Phosphotransferases


Ribosomal target modification
Tetracycline resistance
Most     common       antibiotic          resistance
 encountered in nature

Mechanisms:
   Altered permeability due to chromosomal mutations
   Active efflux      or Ribosomal protection (by
    production of a protein) resulting from acquisition
    of exogenous DNA
Macrolide, Lincosamide and
       Streptogramin resistance:

 Intrinsic resistance is due to low permeability of
  outermembrane protein

     Acquired resistance occurs most often by
    alteration of the ribosomal target

 Drug inactivation and active efflux may also occur
Chloramphenicol resistance
 Enzymatic inactivation:
  – From acquisition of plasmids         encoding
    chloramphenicol acetyl transferase

 Decreased permeability:
Quinolone resistance
 Alteration of target i.e, DNA gyrase (by
  mutation in gyrA gene)

 Decreased permeability
Glycopeptide resistance
 Alteration of target
e.g, Vancomycin resistance in Enterococci
Cotrimoxazole (Sulfonamides and
       trimethoprim) resistance

 Intrinsic resistance: outer membrane
  impermeability
 Acquired resistance:
  – Chromosomal mutations in the target enzymes
    [low level resistance)
  – Plasmid mediated resistance: high level resistance
Resistance to antimycobacaterial
                agents
 First line essential antituberculous agents:
  Rifampin, isoniazid and Pyrazinamide
 First line supplemental: Ethambutol and
  Streptomycin
 Second     line:    Para-aminosalicylic acid,
  ethionamide,       cycloserine,    kanamycin,
  amikacin, capreomycin, thiacetazone
 Resistance to Rifampin:
   – From spontaneous point mutations that alter the beta
     subunit of the RNA polymerase (rpoB) gene
 Resistance to Isoniazid:
   – Mutations in the catalase peroxidase gene or inhA
     gene
 Resistance to Pyrazinamide:
   – Mutations in the pncA gene, which encodes for
     pyrazinamidase

Multidrug resistance/ XDR
Some resistant pathogens
Staphylococcus aureus:
   Penicillin resistance in 1947
   Methicillin resistance in 1961: MRSA causing carious
    fatal diseases
   Vancomycin resistance in the recent years: As VRSA
    and VISA

Enterococci:
   Penicillin resistance seen in 1983
   Vancomycin resistant Enterococcus (VRE) in 1987
   Even emergence of linezolid resistance
Some resistant pathogens (contd.)
 Pseudomonas aeruginosa:
   – One of the worrisome characteristic: low antibiotic
     susceptibility
   – Multidrug resistance common: due to mutation or
     horizontal transfer of resitant genes

 Acinetobacter baumanii
    Multidrug resistance
    Some isolates resistant to all drugs

 Salmonella, Esherichia coli

 Mycobacterium tuberculosis
Tests for detecting antibacterial resistance

 Disk diffusion method

 Screening method: eg, oxacillin resistance screening
  for Staphylococcus, Vancomycin resitance screeening
  for enterococci

 Agar dilution method: by determining minimum
  inhibitory concentration

 Special tests: detection of enzymes mediating
  resistance- colorometric nitrocefin and acidometric
  method for beta lactamase detection
Limitation of Drug Resistance
  Emergence of drug resistance in infections may be minimized in the
  following ways:
   By prudent use of antibiotics; by avoiding exposure of
  microorganisms to a particularly valuable drug by limiting its use,
  especially in hospitals.

 By maintaining sufficiently high levels of the drug in the tissues to
  inhibit both the original population and first-step mutants;

 By simultaneously administering two drugs that do not give cross-
  resistance, each of which delays the emergence of mutants
  resistant to the other drug (eg, rifampin and isoniazid in the
  treatment of tuberculosis); and


 By institution of infection control practices
32

Antibiotic resistance in bacteria 1

  • 1.
    Antibiotic resistance inBacteria MBBS/BDS 1st year 27.10.2010
  • 2.
    Antibiotic resistance inbacteria  Emergence of antibiotic resistance is a major factor limiting long term successful use of an antimicrobial agent.  Antibiotic resistance is a type of drug resistance where a microorganism is able to survive exposure to an antibiotic.  Resistant organism: One that will not be inhibited or killed by an antibacterial agent at concentrations of the drug achievable in the body after normal dosage.  If a bacterium carries several resistance genes, it is called multiresistant or, informally, a superbug or super bacteria.
  • 3.
    Factors contributing forresistance  Misuse of antibiotics < Use of antibiotics with no clinical indication (e.g, for viral infections) < Use of broad spectrum antibiotics when not indicated < Inappropriate choice of empiric antibiotics  Overuse of antibiotics  Addition of antibiotic to the feed of livestock  Failure to follow infection control practices
  • 5.
    Settings that FosterDrug Resistance Community < Day-care centers < Long term care facilities < Homeless shelters < Jails
  • 6.
    Settings that FosterDrug Resistance Hospital < Intensive care units < Oncology units < Dialysis units < Rehab units < Transplant units < Burn units
  • 7.
    Antibiotic resistance inbacteria  Two types: Intrinsic:  Naturally occuring trait  Species or genus specific Acquired:  Acquired resistance implies that a susceptible organism has developed resistance to an agent to which it was previously susceptible, and can occur in two general ways: by mutation (s) in the existing DNA of the organims or by acquisition of new DNA.  Present in only certain strains of a species or of a genus
  • 8.
    Genetics of Resistance Mutationalresistance:  A single chromosomal mutation may result in the synthesis of an altered protein: for example, streptomycin resistance via alteration in a ribosomal protein, or the single aminoacid change in the enzyme dihydtropteroate synthetase resulting in a lowered affinity for sulfonamides  A series of mutations, for example, changes in penicillin binding proteins (PBPs) in penicillin resistant pneumococci
  • 9.
    Genetics of Resistance Resistance by acquisition of new DNA – By Transformation – Conjugation – Transduction Nature of elements involved in transferring DNA:  Plasmids: plasmid mediated resistance much more efficient than the resistance ass. with chromosomal mutation  Transposons
  • 11.
    Mechanism of actionof antibiotics
  • 12.
    DNA gyrase DNA-directed RNA polymerase Quinolones Cell wall synthesis Rifampin ß-lactams & Glycopeptides (Vancomycin) DNA THFA mRNA Trimethoprim Protein Ribosomes synthesis Folic acid inhibition synthesis DHFA 50 50 50 30 30 30 Macrolides & Lincomycins Sulfonamides PABA Protein synthesis Protein synthesis inhibition mistranslation Tetracyclines Aminoglycosides Cohen. Science 1992; 257:1064
  • 13.
    Mechanisms of antibioticresistance : how DO the bacteria do it ??
  • 14.
    Mechanisms of resistance(Contd.) 2. Alteration of Access to the target site (altered uptake or increased exit) Involves decreasing the amt of drug that reaches the target by either:  Altering entry, for example, by decreasing the permeability of the cell wall,  Pumping the drug out of the cell (known as efflux mechanisms) 3. Enzymatic inactivation: Enzymes that modify or destroy the antibacterial agent may be produced (drug inactivation) e.g., Beta lactamases Aminoglycoside modifying enzymes Chloramphenicol acetyl transferase 4. Bypass of an antibiotic sensitive steps
  • 15.
    Mechanisms of resistance: Resistance mechanisms can be broadly classified into 4 types: 1. Alteration of the target site – The target site may be altered so that it has a lowered affinity for the antibacterial (antibiotic), but still functions adequately for nomal metabolism to proceed. Alternatively, an additional target (e.g enzyme) may be synthesized.
  • 16.
    Mechanism of resistanceto particular antibiotics
  • 17.
    Resistance to β-lactams:  Resistance due to β -lactamases: most prevalent  Alteration in the pre-existing penicillin binding proteins (PBPs)  Acquisition of a novel PBP insensitive to beta β – lactams: e.g, methicillin resistance in Staphylococcus aureus (MRSA)  Changes in the outer membrane proteins of Gram negative organisms that prevent these compounds from reaching their targets
  • 18.
    Aminoglycoside Resistance: Intrinsic andacquired resistance due to decreased uptake Acquired resistance is frequently due to plasmid encoded modifying enzymes: Three classes of aminoglycoside modifying enzymes:  Acetyltransferases,  Adenyltransferases and  Phosphotransferases Ribosomal target modification
  • 19.
    Tetracycline resistance Most common antibiotic resistance encountered in nature Mechanisms:  Altered permeability due to chromosomal mutations  Active efflux or Ribosomal protection (by production of a protein) resulting from acquisition of exogenous DNA
  • 20.
    Macrolide, Lincosamide and Streptogramin resistance:  Intrinsic resistance is due to low permeability of outermembrane protein  Acquired resistance occurs most often by alteration of the ribosomal target  Drug inactivation and active efflux may also occur
  • 21.
    Chloramphenicol resistance  Enzymaticinactivation: – From acquisition of plasmids encoding chloramphenicol acetyl transferase  Decreased permeability:
  • 22.
    Quinolone resistance  Alterationof target i.e, DNA gyrase (by mutation in gyrA gene)  Decreased permeability
  • 23.
    Glycopeptide resistance  Alterationof target e.g, Vancomycin resistance in Enterococci
  • 24.
    Cotrimoxazole (Sulfonamides and trimethoprim) resistance  Intrinsic resistance: outer membrane impermeability  Acquired resistance: – Chromosomal mutations in the target enzymes [low level resistance) – Plasmid mediated resistance: high level resistance
  • 25.
    Resistance to antimycobacaterial agents  First line essential antituberculous agents: Rifampin, isoniazid and Pyrazinamide  First line supplemental: Ethambutol and Streptomycin  Second line: Para-aminosalicylic acid, ethionamide, cycloserine, kanamycin, amikacin, capreomycin, thiacetazone
  • 26.
     Resistance toRifampin: – From spontaneous point mutations that alter the beta subunit of the RNA polymerase (rpoB) gene  Resistance to Isoniazid: – Mutations in the catalase peroxidase gene or inhA gene  Resistance to Pyrazinamide: – Mutations in the pncA gene, which encodes for pyrazinamidase Multidrug resistance/ XDR
  • 27.
    Some resistant pathogens Staphylococcusaureus:  Penicillin resistance in 1947  Methicillin resistance in 1961: MRSA causing carious fatal diseases  Vancomycin resistance in the recent years: As VRSA and VISA Enterococci:  Penicillin resistance seen in 1983  Vancomycin resistant Enterococcus (VRE) in 1987  Even emergence of linezolid resistance
  • 28.
    Some resistant pathogens(contd.)  Pseudomonas aeruginosa: – One of the worrisome characteristic: low antibiotic susceptibility – Multidrug resistance common: due to mutation or horizontal transfer of resitant genes  Acinetobacter baumanii  Multidrug resistance  Some isolates resistant to all drugs  Salmonella, Esherichia coli  Mycobacterium tuberculosis
  • 29.
    Tests for detectingantibacterial resistance  Disk diffusion method  Screening method: eg, oxacillin resistance screening for Staphylococcus, Vancomycin resitance screeening for enterococci  Agar dilution method: by determining minimum inhibitory concentration  Special tests: detection of enzymes mediating resistance- colorometric nitrocefin and acidometric method for beta lactamase detection
  • 31.
    Limitation of DrugResistance Emergence of drug resistance in infections may be minimized in the following ways:  By prudent use of antibiotics; by avoiding exposure of microorganisms to a particularly valuable drug by limiting its use, especially in hospitals.  By maintaining sufficiently high levels of the drug in the tissues to inhibit both the original population and first-step mutants;  By simultaneously administering two drugs that do not give cross- resistance, each of which delays the emergence of mutants resistant to the other drug (eg, rifampin and isoniazid in the treatment of tuberculosis); and  By institution of infection control practices
  • 32.