Group Theory and
       Symmetry.

                   two-fold
                  rotational
                     axis



 water
molecule
Molecular Structure:
The most powerful idea in chemistry is the idea of the three-
dimensional structures of molecules. Two techniques have
been invaluable in this regard. One is NMR (Nuclear Magnetic
Resonance), and the other is X-ray crystallography. X-ray
crystallography has been intensively developed as a technique,
which involves the ideas of symmetry of molecules.
Understanding NMR also involves an understanding of
symmetry. Group theory is also vital in understanding and
predicting infra-red and Uv-visible (electronic) spectra.

On the next two slides are structures of complexes of metal
ions determined by X-ray crystallography. These are shown
simply to illustrate the power of X-ray crystallography in
determining molecular structure. Determining such structures
relies heavily on a knowledge of symmetry and group theory.
Crystals of [Cd(DPP)2](ClO4)2
(viewed through a microscope)
X-ray diffractometer:
Monochromatic X-ray
source,
    e.g. Cu Kα X-rays
X-ray diffraction pattern:
The actual structure of the [Cd(DPP)2]2+
             complex cation:

                                                                 N   N

                                                             N           N



 Cd(II)                                                          DPP
cation




                                                      DPP ligand


G. M. Cockrell, R. D. Hancock, D. G. VanDerveer, G. Zhang, R. P. Thummel,
  J. Am. Chem. Soc., 2008, 130, 1420.
Importance of X-ray crystallography

     N-U-O angle              oxo (O2-) anion                   PDA ligand
     = 63.8(2)o




           uranium atom

                                          U-O bond = 2.279(6) Å
Structure of [UO2(PDA)] determined by X-ray crystallography
Nolan E. Dean, R. D. Hancock, M Frisch, C. Cahill, Inorg. Chem., 2008 in the press.
Unit cell of [UO2(PDA)]
Structures of proteins.
Facial symmetry
Invariance to transformation as an
   indicator of facial symmetry:




             Mirror image
Chemistry445lecture7 grouptheory
a   a
Transformations of the benzene
                    molecule:
    The presence of a symmetry element is identified by the fact that we
    can carry out a symmetry operation without the molecule appearing to
    have changed. Thus, for the benzene molecule, rotation by 60 o about
    the six-fold rotation axis does not change its appearance:

                                             six-fold rotation axis
          a    rotate by 60o

                                                  a




The rotation axis is a six-fold rotation axis because we can repeat the operation
six times before we get back to the original orientation of the benzene molecule
Chemistry445lecture7 grouptheory
C3
     C3 or three-fold rotational axis of the
     ammonia molecule. If we rotate the ammonia
     molecule by 360/3 or 120º about this
     axis, its appearance is unchanged.
Rotational axes of BF3
      principal axis
  (highest value of Cn)
   C3                    C3               C2                 C2




                                                                 .



three-fold axis    three-fold axis   two-fold axis       two-fold axis
viewed from         viewed from      viewed from          viewed from
  above               the side         the side              above

                                     Note: there are 3 C2 axes
Chemistry445lecture7 grouptheory
Mirror planes (σ) of BF3:
Mirror planes can contain the principal axis (σv) or be at
right angles to it (σh). BF3 has one σh and three σv planes:
(v = vertical, h = horizontal)

    σv                                   σh
mirror plane         C3            mirror plane
                principal axis                              C3
                                                       principal axis




  σv mirror plane                       σh mirror plane
contains the C axis              is at right angles to the C axis
center of symmetry
      center of symmetry




(Note: The center of symmetry is important in deciding whether orbitals
 are g or u (lecture 2.))
rotate
       by 360o/4




The S4 improper rotation axis here is also a C2 axis
Chemistry445lecture7 grouptheory
Rotational axes and mirror planes of the water
                  molecule:
      C2                           σv             C2       σv
                          C2
 principal axis
                               mirror plane            mirror plane




The water molecule has only one rotational axis, its C2 axis,
which is also its principal axis. It has two mirror planes that
contain the principal axis, which are therefore σv planes. It
has no σh mirror plane, and no center of symmetry.
Rotational axes and mirror planes of benzene
     C6                    C2
principal axis                                    C2




                                                 C2
     C6           σh            C2
                                     σv                 σv




                                                           C6
                                                       principal axis
                                    C6
                                principal axis
Rotational axes and mirror planes of boron trifluoride

            C3                C2
       principal axis
                                                     C2        C2


σh

                                            σv            σv
                        σh




boron trifluoride has a C3 principal                      C3
axis and three C2 axes, a σh mirror plane            principal axis
three σv mirror planes, but no center of inversion

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Chemistry445lecture7 grouptheory

  • 1. Group Theory and Symmetry. two-fold rotational axis water molecule
  • 2. Molecular Structure: The most powerful idea in chemistry is the idea of the three- dimensional structures of molecules. Two techniques have been invaluable in this regard. One is NMR (Nuclear Magnetic Resonance), and the other is X-ray crystallography. X-ray crystallography has been intensively developed as a technique, which involves the ideas of symmetry of molecules. Understanding NMR also involves an understanding of symmetry. Group theory is also vital in understanding and predicting infra-red and Uv-visible (electronic) spectra. On the next two slides are structures of complexes of metal ions determined by X-ray crystallography. These are shown simply to illustrate the power of X-ray crystallography in determining molecular structure. Determining such structures relies heavily on a knowledge of symmetry and group theory.
  • 6. The actual structure of the [Cd(DPP)2]2+ complex cation: N N N N Cd(II) DPP cation DPP ligand G. M. Cockrell, R. D. Hancock, D. G. VanDerveer, G. Zhang, R. P. Thummel, J. Am. Chem. Soc., 2008, 130, 1420.
  • 7. Importance of X-ray crystallography N-U-O angle oxo (O2-) anion PDA ligand = 63.8(2)o uranium atom U-O bond = 2.279(6) Å Structure of [UO2(PDA)] determined by X-ray crystallography Nolan E. Dean, R. D. Hancock, M Frisch, C. Cahill, Inorg. Chem., 2008 in the press.
  • 8. Unit cell of [UO2(PDA)]
  • 11. Invariance to transformation as an indicator of facial symmetry: Mirror image
  • 13. a a
  • 14. Transformations of the benzene molecule: The presence of a symmetry element is identified by the fact that we can carry out a symmetry operation without the molecule appearing to have changed. Thus, for the benzene molecule, rotation by 60 o about the six-fold rotation axis does not change its appearance: six-fold rotation axis a rotate by 60o a The rotation axis is a six-fold rotation axis because we can repeat the operation six times before we get back to the original orientation of the benzene molecule
  • 16. C3 C3 or three-fold rotational axis of the ammonia molecule. If we rotate the ammonia molecule by 360/3 or 120º about this axis, its appearance is unchanged.
  • 17. Rotational axes of BF3 principal axis (highest value of Cn) C3 C3 C2 C2 . three-fold axis three-fold axis two-fold axis two-fold axis viewed from viewed from viewed from viewed from above the side the side above Note: there are 3 C2 axes
  • 19. Mirror planes (σ) of BF3: Mirror planes can contain the principal axis (σv) or be at right angles to it (σh). BF3 has one σh and three σv planes: (v = vertical, h = horizontal) σv σh mirror plane C3 mirror plane principal axis C3 principal axis σv mirror plane σh mirror plane contains the C axis is at right angles to the C axis
  • 20. center of symmetry center of symmetry (Note: The center of symmetry is important in deciding whether orbitals are g or u (lecture 2.))
  • 21. rotate by 360o/4 The S4 improper rotation axis here is also a C2 axis
  • 23. Rotational axes and mirror planes of the water molecule: C2 σv C2 σv C2 principal axis mirror plane mirror plane The water molecule has only one rotational axis, its C2 axis, which is also its principal axis. It has two mirror planes that contain the principal axis, which are therefore σv planes. It has no σh mirror plane, and no center of symmetry.
  • 24. Rotational axes and mirror planes of benzene C6 C2 principal axis C2 C2 C6 σh C2 σv σv C6 principal axis C6 principal axis
  • 25. Rotational axes and mirror planes of boron trifluoride C3 C2 principal axis C2 C2 σh σv σv σh boron trifluoride has a C3 principal C3 axis and three C2 axes, a σh mirror plane principal axis three σv mirror planes, but no center of inversion