CLINICAL INFORMATICS AND DIGITAL HEALTH
IMPLICATIONS FOR CLINICAL CODING:
MY TOP 5 PAPERS OF 2017
SARAH DORWARD
HEALTH INFORMATION MANAGER
SEARCH STRATEGY
• Databases: PubMed, Proquest Central, Embase, Google Scholar,
University of Melbourne Discovery Search Tool
• Journal Search: JAMIA, JAHIMA, HIMJ
• Key words: Clinical informatics, health informatics, digital health,
electronic medical records, clinical coding, computer-assisted
clinical coding, automated clinical coding, ICD, clinical classification
• Articles retrieved: 799
• Number of articles shortlisted for review: 19
RATIONALE
• How is health informatics, in particular EHRs, contributing to the
development of computer-assisted clinical coding applications?
• Does the study use a version of ICD, ICHI or SNOMED CT?
• Could the results of the study be applied to Australian EHRs to improve
clinical coding system integration?
• How could the results of the study improve clinical coding accuracy and
efficiency in Australia through health informatics innovations?
Scheurwegs, E., Cule, B., Luyckx, K., Luyten, L., & Daelemans, W. (2017). Selecting relevant
features from the electronic health record for clinical code prediction. Journal of
Biomedical Informatics, 74, 92-103. doi:10.1016/j.jbi.2017.09.004
• AIM: To compare feature selection methods to identify the most reliable information
within an EHR to predict diagnosis and procedure codes.
• METHOD: Different feature selection methods were applied to structured and
unstructured data across 6 medical specialities across Antwerp University Hospital.
• FINDINGS: Confidence coverage feature selection applied to unstructured data was
the most successful method of predicting clinical codes.
• Feature selection system was designed to be the foundation of a CAC application to
support clinical coders.
• LIMITATIONS: Dutch-language data used, sample from one hospital setting, ICD-10
variations, implications for clinical coding were hypothetical.
Jia, Z., Qin, W., Duan, H., Lv, X., & Li, H. (2017). A hybrid method for ICD-10 Auto-Coding of
Chinese diagnoses. In A.V. Gundlapalli, M-C. Jaulent, & D. Zhao (Eds.), MEDINFO 2017:
Precision Healthcare through Informatics (pp.427-431). Amsterdam: IMIA and IOS
Press.
• AIM: To develop a hybrid auto-coding system to improve coding efficiency in light of China’s
shortage of skilled clinical coders.
• METHOD: Three integrated approaches to automated-code assignment. The results were
matched against 1537 principle diagnosis codes assigned by human coders.
• FINDINGS: It was found that the combination of the three approaches lead to 96.9% precision
of auto-coding.
• The character-matching approach was not efficient, had poor accuracy and was to be
abandoned from future trials.
• LIMITATIONS: The system was found to have poor interoperability and transferability due to
variations in clinical terminology across different clinical departments and other hospitals.
Azadmanjir, Z., Safdari, R., Ghazisaeedi, M., Mokhtaran, M., & Kameli, M.E. (2017) A three-
phase decision model of computer-aided coding for the Iranian Classifications of
Health Interventions (IRCHI). Acta Infomatica Medica, 25(2), 88-93.
doi: 10.5455/aim.201725.88-93
• AIM: To develop a CAC system suitable for use in Iranian health services.
• METHOD: Literature review of current CAC systems currently in use.
• FINDINGS: 41 CAC systems are in use, 11 are fully-automated.
• Fully-automated CAC systems are dependent of NLP, integration with EHR,
unique language and standard terminology in medical documentation.
• LIMITATIONS: Accuracy of code assignment was not considered.
• Semi-automated CAC was not trialled and further research is needed.
Lu, M., Chacra, W., Rabin, D., Rupp, L.B., Trudeau, S., Li, J., & Gordon, S.C. (2017). Validity of
an automated algorithm using diagnosis and procedures codes to identify
decompensated cirrhosis using electronic health records. Clinical Epidemiology,9, 369-
376. doi:10.2147/CLEP.S136134
• AIM: Extraction of diagnosis and procedure codes to identify patients with decompensated cirrhosis.
• To see if coding systems for diagnosis and procedures used within an EHR could be applied to clinical
coding.
• METHOD: Algorithm was applied to a random sample of 296 patient EHRs. Cluster coding of
manifestations were used to identify decompensated cirrhosis.
• FINDINGS: Algorithm was found to have high reliability of predicting decompensated cirrhosis.
• Algorithm could be applied to EHRs to trigger alerts of possible conditions.
• APPLICATIONS: Cluster coding code be used to assist with code allocation of conditions poorly
represented by ICD-10.
• While codes generated by an EMR could support clinical coding, it could not replace it due to the strict
coding criteria that is in place in Australia.
Lawley, M., Truran, D., Hansen, D., Good, N., Staib, A., & Sullivan, C. (2017). SnoMAP:
Pioneering the path for clinical coding to improve patient care. In A. Ryan, L.K.
Schaper, & S. Whetton (Eds.), Integrating and Connecting Care: Selected papers
from the 25th Australian national health Informatcis Conference (HIC 2017) (pp.55-
62). Unknown: IOS Press
• AIM: Tool to map SNOMED CT codes to ICD-10-AM codes for administrative
purposes.
• METHOD: Mapping occurred through a web-based tool. Patient data encoded in
SNOMED CT where uploaded and converted to ICD-10-AM codes.
• INDINGS: The tool allowed clinicians to document freely within the EHR without
compromising administrative reporting requirements.
• LIMITATIONS: Mapping is not a long term solution.
CONCLUSIONS
• Even with EHR, fully integrated and automated CAC applications are still only in their
early development and testing stages.
• Studies were limited to single sites, specialities or diagnosis which has implications
for portability and transferability.
• Standardised clinical terminologies and structures within EHR are essential to
support automated CAC applications.
• Strong results using data from EHR for code mapping and identification of specific
diagnosis.
• Fully automated CAC has been successful where the clinical coding is based around
principle diagnosis assignment only.
FUTURE DIRECTIONS
• Integrating clinical coding programs to EHRs.
• Australian-based research on automated coding of routine procedures.
• Better understanding of clinical terminology and data structure across clinical
disciplines.
• Development or modification of automated clinical coding tools that can be
used in Australia.

My top 5 papers of 2017 about clinical informatics and digital health implications for clinical coding

  • 1.
    CLINICAL INFORMATICS ANDDIGITAL HEALTH IMPLICATIONS FOR CLINICAL CODING: MY TOP 5 PAPERS OF 2017 SARAH DORWARD HEALTH INFORMATION MANAGER
  • 2.
    SEARCH STRATEGY • Databases:PubMed, Proquest Central, Embase, Google Scholar, University of Melbourne Discovery Search Tool • Journal Search: JAMIA, JAHIMA, HIMJ • Key words: Clinical informatics, health informatics, digital health, electronic medical records, clinical coding, computer-assisted clinical coding, automated clinical coding, ICD, clinical classification • Articles retrieved: 799 • Number of articles shortlisted for review: 19
  • 3.
    RATIONALE • How ishealth informatics, in particular EHRs, contributing to the development of computer-assisted clinical coding applications? • Does the study use a version of ICD, ICHI or SNOMED CT? • Could the results of the study be applied to Australian EHRs to improve clinical coding system integration? • How could the results of the study improve clinical coding accuracy and efficiency in Australia through health informatics innovations?
  • 4.
    Scheurwegs, E., Cule,B., Luyckx, K., Luyten, L., & Daelemans, W. (2017). Selecting relevant features from the electronic health record for clinical code prediction. Journal of Biomedical Informatics, 74, 92-103. doi:10.1016/j.jbi.2017.09.004 • AIM: To compare feature selection methods to identify the most reliable information within an EHR to predict diagnosis and procedure codes. • METHOD: Different feature selection methods were applied to structured and unstructured data across 6 medical specialities across Antwerp University Hospital. • FINDINGS: Confidence coverage feature selection applied to unstructured data was the most successful method of predicting clinical codes. • Feature selection system was designed to be the foundation of a CAC application to support clinical coders. • LIMITATIONS: Dutch-language data used, sample from one hospital setting, ICD-10 variations, implications for clinical coding were hypothetical.
  • 5.
    Jia, Z., Qin,W., Duan, H., Lv, X., & Li, H. (2017). A hybrid method for ICD-10 Auto-Coding of Chinese diagnoses. In A.V. Gundlapalli, M-C. Jaulent, & D. Zhao (Eds.), MEDINFO 2017: Precision Healthcare through Informatics (pp.427-431). Amsterdam: IMIA and IOS Press. • AIM: To develop a hybrid auto-coding system to improve coding efficiency in light of China’s shortage of skilled clinical coders. • METHOD: Three integrated approaches to automated-code assignment. The results were matched against 1537 principle diagnosis codes assigned by human coders. • FINDINGS: It was found that the combination of the three approaches lead to 96.9% precision of auto-coding. • The character-matching approach was not efficient, had poor accuracy and was to be abandoned from future trials. • LIMITATIONS: The system was found to have poor interoperability and transferability due to variations in clinical terminology across different clinical departments and other hospitals.
  • 6.
    Azadmanjir, Z., Safdari,R., Ghazisaeedi, M., Mokhtaran, M., & Kameli, M.E. (2017) A three- phase decision model of computer-aided coding for the Iranian Classifications of Health Interventions (IRCHI). Acta Infomatica Medica, 25(2), 88-93. doi: 10.5455/aim.201725.88-93 • AIM: To develop a CAC system suitable for use in Iranian health services. • METHOD: Literature review of current CAC systems currently in use. • FINDINGS: 41 CAC systems are in use, 11 are fully-automated. • Fully-automated CAC systems are dependent of NLP, integration with EHR, unique language and standard terminology in medical documentation. • LIMITATIONS: Accuracy of code assignment was not considered. • Semi-automated CAC was not trialled and further research is needed.
  • 7.
    Lu, M., Chacra,W., Rabin, D., Rupp, L.B., Trudeau, S., Li, J., & Gordon, S.C. (2017). Validity of an automated algorithm using diagnosis and procedures codes to identify decompensated cirrhosis using electronic health records. Clinical Epidemiology,9, 369- 376. doi:10.2147/CLEP.S136134 • AIM: Extraction of diagnosis and procedure codes to identify patients with decompensated cirrhosis. • To see if coding systems for diagnosis and procedures used within an EHR could be applied to clinical coding. • METHOD: Algorithm was applied to a random sample of 296 patient EHRs. Cluster coding of manifestations were used to identify decompensated cirrhosis. • FINDINGS: Algorithm was found to have high reliability of predicting decompensated cirrhosis. • Algorithm could be applied to EHRs to trigger alerts of possible conditions. • APPLICATIONS: Cluster coding code be used to assist with code allocation of conditions poorly represented by ICD-10. • While codes generated by an EMR could support clinical coding, it could not replace it due to the strict coding criteria that is in place in Australia.
  • 8.
    Lawley, M., Truran,D., Hansen, D., Good, N., Staib, A., & Sullivan, C. (2017). SnoMAP: Pioneering the path for clinical coding to improve patient care. In A. Ryan, L.K. Schaper, & S. Whetton (Eds.), Integrating and Connecting Care: Selected papers from the 25th Australian national health Informatcis Conference (HIC 2017) (pp.55- 62). Unknown: IOS Press • AIM: Tool to map SNOMED CT codes to ICD-10-AM codes for administrative purposes. • METHOD: Mapping occurred through a web-based tool. Patient data encoded in SNOMED CT where uploaded and converted to ICD-10-AM codes. • INDINGS: The tool allowed clinicians to document freely within the EHR without compromising administrative reporting requirements. • LIMITATIONS: Mapping is not a long term solution.
  • 9.
    CONCLUSIONS • Even withEHR, fully integrated and automated CAC applications are still only in their early development and testing stages. • Studies were limited to single sites, specialities or diagnosis which has implications for portability and transferability. • Standardised clinical terminologies and structures within EHR are essential to support automated CAC applications. • Strong results using data from EHR for code mapping and identification of specific diagnosis. • Fully automated CAC has been successful where the clinical coding is based around principle diagnosis assignment only.
  • 10.
    FUTURE DIRECTIONS • Integratingclinical coding programs to EHRs. • Australian-based research on automated coding of routine procedures. • Better understanding of clinical terminology and data structure across clinical disciplines. • Development or modification of automated clinical coding tools that can be used in Australia.