Lists (5)
Starred repositories
A rapid and low-memory multiple-genome aligner for closely related genomes
Ultrafast identification of signature sequences in microbial genomes
Abundance analysis tool for short-read metagenomics
Ultra-rapid detection of viral variants directly from sequencing data
Notes and workarounds for accessing the Mac OS X pasteboard in tmux sessions. Note: The pu branch (“Proposed Updates”) may be rewound without notice.
Local alignment search with k-bounded matching statistics.
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
A new high-resolution long-read metagenome assembler for even noisy reads
Module for embedding igv.js in an IPython notebook
Locality Sensitive Hashing in Rust with Python bindings
https://antidote.sh - the cure to slow zsh plugin management
A pure-Rust two-level dynamic b-tree. This crate implements a compact set data structure that preserves its elements' sorted order and allows lookups of entries by value or sorted order position.
A hash table with consistent order and fast iteration; access items by key or sequence index
Rust implementation of the HNSW algorithm (Malkov-Yashunin)
☄🌌️ The minimal, blazing-fast, and infinitely customizable prompt for any shell!
A General-purpose Task-parallel Programming System using Modern C++
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
Deep learning framework for SV calling and genotyping
Benchmark suite for partial order aligners written in Rust
Various algorithms for analysing genomics data
What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
GRIDSS: the Genomic Rearrangement IDentification Software Suite