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@ding-lab

Li Ding's Lab

Li Ding's Lab at the Washington University School of Medicine

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  1. msisensor msisensor Public archive

    microsatellite instability detection using tumor only or paired tumor-normal data

    C++ 132 55

  2. CharGer CharGer Public

    Characterization of Germline variants

    Python 99 37

  3. MuSiC2 MuSiC2 Public

    identifying mutational significance in cancer genomes

    Perl 62 20

  4. hotspot3d hotspot3d Public

    3D hotspot mutation proximity analysis tool

    Perl 51 26

  5. PanCanAtlasGermline PanCanAtlasGermline Public

    R 44 14

  6. GenomeVIP GenomeVIP Public

    PHP 20 5

Repositories

Showing 10 of 143 repositories
  • VirusScan Public

    VirusScan Pipeline

    ding-lab/VirusScan’s past year of commit activity
    Perl 11 7 0 0 Updated Dec 29, 2025
  • IRD Public
    ding-lab/IRD’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 16, 2025
  • FSAudit Public

    Filesystem audit visualization

    ding-lab/FSAudit’s past year of commit activity
    Shell 1 0 0 0 Updated Dec 12, 2025
  • mCRC_publication Public
    ding-lab/mCRC_publication’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 5, 2025
  • morph Public
    ding-lab/morph’s past year of commit activity
    Python 13 MIT 2 1 0 Updated Oct 24, 2025
  • ONTsplice Public

    pipeline for processing ONT RNA-Seq data

    ding-lab/ONTsplice’s past year of commit activity
    Perl 0 0 0 0 Updated Oct 23, 2025
  • rcwrapper Public

    calculate vaf for variants based on bam

    ding-lab/rcwrapper’s past year of commit activity
    Perl 0 0 0 0 Updated Oct 17, 2025
  • somaticwrapper Public

    Detect somatic variants from tumor and normal WGS/WXS data

    ding-lab/somaticwrapper’s past year of commit activity
    Perl 19 AGPL-3.0 9 0 0 Updated Oct 16, 2025
  • SRescue Public

    Pipeline for SR-LR integration

    ding-lab/SRescue’s past year of commit activity
    Nextflow 0 0 0 0 Updated Oct 8, 2025
  • ding-lab-spatial Public

    misc. spatial analyses for the Ding lab.

    ding-lab/ding-lab-spatial’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 30, 2025
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