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pertpy Public
Forked from scverse/pertpySingle-cell perturbation analysis
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annbatch Public
Forked from scverse/annbatchMinibatch loading for on-disk anndata files, co-developed by lamin and scverse
Python MIT License UpdatedDec 18, 2025 -
spatialdata-sandbox Public
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contextsc Public
scverse context for agentic coding
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giovp.github.io Public
Forked from daattali/beautiful-jekyll✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
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cellarium-ml Public
Forked from cellarium-ai/cellarium-mlDistributed single-cell data analysis.
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedSep 18, 2025 -
UCE Public
Forked from snap-stanford/UCEUCE is a zero-shot foundation model for single-cell gene expression data
Python MIT License UpdatedApr 22, 2025 -
spatialdata-io-feedstock Public
Forked from conda-forge/spatialdata-io-feedstockA conda-smithy repository for spatialdata-io.
BSD 3-Clause "New" or "Revised" License UpdatedApr 4, 2025 -
multiscale-spatial-image-feedstock Public
Forked from conda-forge/multiscale-spatial-image-feedstockA conda-smithy repository for multiscale-spatial-image.
BSD 3-Clause "New" or "Revised" License UpdatedMar 15, 2025 -
spatial-image-feedstock Public
Forked from conda-forge/spatial-image-feedstockA conda-smithy repository for spatial-image.
BSD 3-Clause "New" or "Revised" License UpdatedMar 11, 2025 -
xarray-dataclasses-feedstock Public
Forked from conda-forge/xarray-dataclasses-feedstockA conda-smithy repository for xarray-dataclasses.
BSD 3-Clause "New" or "Revised" License UpdatedMar 11, 2025 -
cellxgene-census Public
Forked from chanzuckerberg/cellxgene-censusCZ CELLxGENE Discover Census
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ott Public
Forked from ott-jax/ottOptimal Transport tools implemented with the JAX framework, to get auto-diff, parallel and jit-able computations.
Python Apache License 2.0 UpdatedSep 16, 2024 -
napari-spatialdata-feedstock Public
Forked from conda-forge/napari-spatialdata-feedstockA conda-smithy repository for napari-spatialdata.
BSD 3-Clause "New" or "Revised" License UpdatedMay 28, 2024 -
vitessce-python Public
Forked from vitessce/vitessce-pythonPython API and Jupyter widget for Vitessce
Python MIT License UpdatedMay 7, 2024 -
Perturb-OT Public
Forked from Genentech/Perturb-OTCross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.
Jupyter Notebook Other UpdatedMay 6, 2024 -
lamindb Public
Forked from laminlabs/lamindbManage R&D data and analyses.
Python Apache License 2.0 UpdatedMay 6, 2024 -
random-promoter-dream-challenge-2022 Public
Forked from de-Boer-Lab/random-promoter-dream-challenge-2022Python MIT License UpdatedMay 1, 2024 -
ome-zarr-py Public
Forked from ome/ome-zarr-pyImplementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Python Other UpdatedApr 26, 2024 -
ciclo Public
Forked from cgarciae/cicloA functional training loops library for JAX
Python MIT License UpdatedFeb 13, 2024 -
squidpy-feedstock Public
Forked from conda-forge/squidpy-feedstockA conda-smithy repository for squidpy.
BSD 3-Clause "New" or "Revised" License UpdatedFeb 6, 2024 -
ifom-tutorials-2023 Public
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedOct 16, 2023 -
multiscale-spatial-image Public
Forked from spatial-image/multiscale-spatial-imageGenerate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
Python Apache License 2.0 UpdatedOct 14, 2023 -
SingleCellOpenProblems Public
Forked from openproblems-bio/openproblemsFormalizing and benchmarking open problems in single-cell genomics
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Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Bikeshed Other UpdatedJul 10, 2023 -
pydantic-ome-ngff Public
Forked from JaneliaSciComp/pydantic-ome-ngffPydantic models for OME-NGFF
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schist Public
Forked from dawe/schistAn interface for Nested Stochastic Block Model for single cell analysis
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 17, 2023 -
spatial-image Public
Forked from spatial-image/spatial-imageA multi-dimensional spatial image data structure for scientific Python.
Python MIT License UpdatedFeb 6, 2023
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