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trans-eQTL

Methods

  1. Matrix eQTL: Pairwise SNP vs. gene. (genome-wide, or for a subset of SNPs e.g. protein-coding)
  2. CPMA: joint method (SNP vs. all genes, look at p-value distribution)
  3. x-QTL: joint method (SNP vs. all genes, look at mixture of p-values)

Instructions of how to run each specific method are in their respective folders.

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