Code repository for the GBM-CARE consortium IDH-WT part

characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities

An automated method to measure TDLU involution

RIDDEN command-line interface: Data-driven inference of receptor activity for cell-cell communication studies

A unified interface to spatial transcriptomics deconvolution tools

A repository for benchmarking spatial deconvolution and mapping tools

The random graph model to infer cell-cell communication networks based on bulk RNA-seq data. Contains the code used for the "Mathematically mapping the network of cells in the tumor microenvironmen…

Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper

Spatial direct messaging detected by bivariate Moran

Mutation Calling Pipelines

stPlus: reference-based enhancement of spatial transcriptomics

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

A fresh approach to package installation

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

Action that converts TODO comments to GitHub issues on push.

Mollecular Functional Portraits

a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data

The collection of custom widgets for SurveyJS: Survey Library and Survey Creator 📦

React components for faster and simpler web development. Build your own design system, or start with Material Design.