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1. scenicplus scenicplus Public

   Forked from aertslab/scenicplus

   SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

   Jupyter Notebook

2. pubmedminer pubmedminer Public

   Utility scripts to accelerate the retrieval of publications with relevant information based on semantic terminology search

3. singlecellvariantanalysis singlecellvariantanalysis Public

   Utility scripts to detect and quantify large-scale genomic alternations in 10X single-cell RNA-seq data

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4. scvi-tools scvi-tools Public

   Forked from scverse/scvi-tools

   Deep probabilistic analysis of single-cell and spatial omics data

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5. mousipy mousipy Public

   Forked from stefanpeidli/mousipy

   Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.

   Jupyter Notebook

6. ccAFv2_py ccAFv2_py Public

   Forked from plaisier-lab/ccAFv2_py

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