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AnnData interoperability in R

R 137 15 Updated Dec 17, 2025

Lightweight helper to install scvi-tools in Google Colab

Python 2 1 Updated Dec 22, 2025

Accelerated, Python-only, single-cell integration benchmarking metrics

Python 79 20 Updated Dec 23, 2025
Jupyter Notebook 2 1 Updated Sep 3, 2024

Deep probabilistic analysis of single-cell and spatial omics data

Python 1,521 429 Updated Dec 28, 2025

CZ CELLxGENE Discover Census

Jupyter Notebook 114 29 Updated Dec 22, 2025

Notebooks used in scvi-tools tutorials

Jupyter Notebook 58 29 Updated Dec 22, 2025