Materials from fMRI data analysis course for cognitive science students.

Open-Source Python Software for Functional MRI Analysis

Neuropycon package of functions for electrophysiology analysis, can be used from graphpype and nipype

This is an introductory Python course I am running for the 2024 Health and Data Science CDT at Oxford University.

This repository contains all code for the BLMM toolbox. It is currently a WIP.

Simple (and naive) tool to plot 3D glass brain in python

Python package to access BIDS datasets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

A Fully-Reproducible Workflow for Network Analysis of Functional and Structural MRI

Some jupyter notebooks for denoising and estimation of functional connectivity

Denoising and visualization tools for functional connectivity data

brain connectivity toolbox for python

Learning and teaching materials on applying machine learning algorithms to fMRI data.

Machine learning for NeuroImaging in Python

Denoising and visualization tools for functional connectivity data

Repository containing a code for network analyses of longitudinal working memory training data with multi-session fMRI scanning.

Workflows and interfaces for neuroimaging packages

Neuropycon package of functions for electrophysiology analysis, can be used from ephypype and nipype

AnarPy is a Python package to facilitate the simulation, analysis, and replication of several experiments using computational whole brain models. This package is developed and maintained by the Val…

brain connectivity toolbox for python

functional connectivity between distributed brain regions and networks

capstone project on fMRI functional connectivity

machine learning for neuroimaging in python

A toolkit for time series machine learning and deep learning

a toolkit for machine learning from time series

multivariate prediction from human brain functional MRI data

Code release for Cole et al. (2021) "The functional relevance of task-state functional connectivity", Journal of Neuroscience

The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine h…