Stars
A web-component to easily embed a bluesky feed.
A k-mer search engine for all Sequence Read Archive public accessions
Rust libraries and programs focused on succinct data structures
vicLeva / bqf
Forked from frankandreace/cqf_implementationImplementation of a Backpack Quotient Filter
Compacted and colored de Bruijn graph construction and querying
🗜 💻 A crash course on Data Compression.
modular k-mer count matrix and Bloom filter construction for large read collections
Fast Scalable Minimal Perfect Hash for Large Keysets
VarIant SimulatOR for short, long and linked reads
Binary sequence compression providing constant time rank and logarithmic time select in nH_o(B) + o(n) bits.
A website displaying hundreds of charts made with Python
Advent of Code solutions 2015-2023
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
🖥 Control your display's brightness & volume on your Mac as if it was a native Apple Display. Use Apple Keyboard keys or custom shortcuts. Shows the native macOS OSDs.
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
A minimal C++11 header only serializer. Can serialize basic types, strings, containers, maps and custom classes. No suppprt yet for pointer types.
Joplin - the privacy-focused note taking app with sync capabilities for Windows, macOS, Linux, Android and iOS.
⛓ Correct misassemblies using linked AND long reads
DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.