Stars
An R package that uses various visualization graphics to display the proportion of cell types in different samples of single-cell transcriptome.
Find causal cell-types underlying complex trait genetics
📚 Tools and databases for analyzing HLA and VDJ genes.
ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequence conservation.
Exon Group Ideogram based detection of Orthologous exons and Orthologous isoforms
T/B cell receptor sequencing analysis notes
R package implementation of Milo for testing for differential abundance in KNN graphs
R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles
An open access book on scientific visualization using python and matplotlib
This repository contains implementations and illustrative code to accompany DeepMind publications
A toolkit of spatial transcriptomic analysis.
ChIP-seq analysis notes from Ming Tang
An awesome repository of community-curated applications of ChatGPT and other LLMs in computational biology
hemberg-lab / scRNA.seq.course
Forked from rstudio/bookdown-demoAnalysis of single cell RNA-seq data course
Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School
TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.