Fast FASTQ sample demultiplexing in Rust.

A better, faster way to count guides in CRISPR screens.

A small utility for formatting things the way Tim prefers.

Data from the Human PanGenomics Project

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

This repository contains information about latest release from Genome in a Bottle project

An argument parsing library for Scala

Common scala utilities

Create force-directed graphs of RNA secondary structures.

Java Bindings (JNI) for bwa

Tools for working with genomic and high throughput sequencing data.

A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs

A Java API for high-throughput sequencing data (HTS) formats.

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.