Differential quantification of alternative splicing events on spliced pangenome graphs

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

Methylation analysis pipeline for genome graph

Tools for working with agp files

The PanGenome Graph Builder

Some components that speed up and reduce resource cost for original ALLHiC

A list of software for pangenomics

Python library to facilitate genome assembly, annotation, and comparative genomics

strange pangenome and large graph visualization

A library for running k-mers based GWAS

ChIP-seq peak caller for reads mapped to a graph-based reference genome

accurate LiftOver tool for new genome assemblies

Pan-genome Synteny Map Visualization

A collection of genomics software tools written in Rust

GFA parser in Rust

counts k-mers, written in rust

Quickly save useful bash commands

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

A chromosomal visualization package for python.

Simple tools for working with Hi-C data